Rothia terrae: IDM49_08720
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Entry
IDM49_08720 CDS
T06818
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rter
Rothia terrae
Pathway
rter03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rter00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IDM49_08720 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rter03400
]
IDM49_08720 (mfd)
Enzymes [BR:
rter01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IDM49_08720 (mfd)
DNA repair and recombination proteins [BR:
rter03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IDM49_08720 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
DUF3638
UB2H
Motif
Other DBs
NCBI-ProteinID:
QNV37316
UniProt:
A0A7H2BCC0
LinkDB
All DBs
Position
complement(1908609..1912244)
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AA seq
1211 aa
AA seq
DB search
MSLRGLTAFLNTDERFTTLVSRAAVPVSERFEELVIGAVDGIRPVLLAEFARGVRAETGG
TILAVTATDREAEDLSVALESYIEPELVQFFPAWETLPHERLSPRSDTVGQRLNVIRALT
VDAASRPAIVIAPVRSVLQPLVSGLENMQSVELTVGEEKDFDSVVKSLSAAAYSRVDLVS
KRGEFAVRGGILDVFSPVEDHPVRIEFFGDEVENMRWFSVADQRTIASKTAPTELIAPPC
RELLITPEVMSKAARLKNDFPGAAAMLEKIAGGIYVEGMESLTPLLVEKMTTLIELLPAG
SLPVIFEPEKVRTRAHDLVQTNEEFLFAAWESASDGTDAPLDLGQNGGAFASGGFRTIAQ
TRADALAKQLGWWSFTALGIDEEADAESHVYTYHARVPHSFAGNVTELLDEVTRKVKDGW
RIVAVTDGPGPLQRLSEVFLEAQVPAARTEDLTAEPASGIVELTTAAAGKGFMIDELKVG
LLTEADILGKASPYTTRDLRSAKLPVRRRKKAVDPMSLKAGDYVVHEQHGIGQFVEMTQR
PIAGAMIKPGQPKPMKEYLVLEYASSKRGAPRDRLFVPTDQLDQVSNYVGGDAPTLSKMG
GSDWAKTKSRARKAVKEIAADLIKLYSARQASKGHAFGTDTPWQRELEEAFPYNETPDQL
SAINDVKSDMERGIPMDRLISGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHF
ETFNERFSGFPVRVKVLSRFQKAKETKEIQEGIKNGSVDIVVGTHRLLSESTQFKDLGLV
IIDEEQRFGVEHKEKLKTMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLTTPPEERHPV
LTFVGAKTEKQITAAIRRELMREGQVFFVHNRVSSIERTAAEIQKLVPEARIAVAHGKMS
ESRLEQIIVDFWERRFDVLVCTTIVETGLDISNANTLIVDGAQNYGLSQLHQLRGRVGRG
RERAYAYFLYPVDKPLGEVALERLKAVAAHNELGAGMQLAMKDLEIRGAGNLLGGEQSGH
IAGVGFDLYLRLVGEAVANFRGDTEEAAPAEVKIELPINAHMPHEYVSSERLRLAAYREI
AQATSAEALDEIREELVDRYGAIPEPTENLFQVALLRLKAREVAVREIQLMGPKVRVFPV
NDLPESRKMRLERMYPGALYKQIPGTEDWQILLPRPKTARVGGKDLVDREIIDWAESFID
LILAEKAPVQQ
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcgcggtctaactgcttttcttaacaccgatgaacgatttaccacgctcgtt
tctcgcgctgccgttcccgtctcagaacgctttgaagagcttgtcattggggcggtagat
ggcatccgccccgttttgctcgccgaattcgcgcggggtgtgcgtgctgaaaccggcgga
accatcctggcggtcaccgcaacagaccgcgaggcagaagaccttagcgtcgcccttgag
tcatatatcgaaccggaactagtacagtttttccctgcctgggagaccctgccgcacgaa
cgcttgtcaccgcgaagcgacaccgtcgggcagcgtctgaacgttattcgcgccctcacc
gtggacgccgcatcccgccccgctattgttatcgcaccggtgcgatcggttctgcaacca
ctggtttcggggctggaaaatatgcagtcagtagaacttacggttggcgaagaaaaggac
ttcgactcagtcgtaaaatcactgtcagcagctgcttactcccgcgtcgacctcgtctca
aagcgcggagaatttgcagtgcgcggcggtattctcgatgtcttctcaccggtcgaagat
caccccgtacgcatcgaattcttcggtgatgaagtcgagaacatgcgctggttctccgta
gccgaccagcgcaccatcgcctccaaaactgctcccacagaacttattgcaccgccgtgc
cgagagctactgatcacccccgaggtcatgagtaaagcagcccgcctaaaaaatgatttt
cccggcgctgccgccatgctcgaaaaaatcgccggcggaatctatgtagaaggcatggaa
tcgctcacacccttgctcgttgaaaagatgaccactctcatcgagctgctaccggctggc
tcactgcctgtcatcttcgagcccgaaaaggtgcgcacccgtgcccacgatttggtgcaa
accaatgaggaattcctctttgccgcctgggaatcagcgtccgacggcaccgacgcacca
ctagacttagggcagaacgggggagcattcgcatccggcggctttaggacgattgcgcaa
actcgcgctgacgccttggcaaagcaactgggctggtggagtttcaccgcgctgggcatc
gacgaagaagctgacgctgaatcgcacgtctacacctaccacgcccgcgtcccgcactcc
ttcgccggcaacgtgaccgaactgcttgacgaggtaacccgcaaggtcaaggacggctgg
cgcatcgtggcagtaaccgatgggccgggcccgctacaacgtctgagcgaagtattttta
gaagcacaggttccagcagcgcgcaccgaagacctcaccgccgaacccgcatcgggcatc
gttgagctcaccacggcagctgctggcaaaggctttatgattgacgagctcaaagtcggg
ttactaactgaagccgacatcttgggcaaagcaagcccctacaccacccgggatttacgt
agcgctaagttgccggtgcgacgccgcaaaaaagccgtggatcccatgagcctcaaagcg
ggggattacgtggtgcacgagcagcacggtatcggacagttcgtcgaaatgacccagcgc
cctatcgccggtgcaatgatcaagcctggccagcccaagcccatgaaggaatacctggtg
ctggagtacgcgtcctccaagcgaggagcgccgcgcgaccgattgtttgtacccacagac
cagctggatcaggtatcaaactacgtaggcggcgatgcacccacgctgtctaaaatgggc
ggtagcgactgggcgaaaactaagtcccgcgcccgcaaggccgtcaaagaaatcgcagca
gatctcatcaagctgtattcggcgcgtcaagcatctaagggtcatgcattcggcactgac
accccctggcaacgcgaacttgaagaggccttcccctacaatgaaactcccgatcagctc
tcagccatcaacgacgtcaagtctgatatggaacgcgggattcctatggaccgcctcatc
tcaggcgatgttggctacggcaaaacagagattgcggtacgcgccgccttcaaagcggtg
caggatggcaaacaggtagcggttctcgtgcccaccaccttgctggcgcaacagcatttt
gagacgttcaatgagcgtttctcgggattccccgtgcgcgtcaaagtgctttcgcgcttt
caaaaggctaaggaaaccaaggaaatccaagagggtatcaagaacggttctgtcgatatt
gtggttggcacgcaccgcctgctctcagaatctacacagttcaaagacctcggcctggtg
attatcgacgaggaacagcgttttggcgttgagcacaaagaaaagctcaaaaccatgcgc
accaatgtggacgtgcttgcgatgtcggcaactccgattccacgtaccttggaaatgtcg
ctgacaggaatccgcgaaacctcaacgttgacaaccccacccgaggaacgccacccggta
ctcaccttcgtcggtgctaagacggaaaagcagattactgccgctattcgccgtgaactt
atgcgcgaaggtcaggtcttcttcgttcacaaccgtgtctcatcgattgaacgcacggct
gctgagattcagaagctggtgcccgaggctcgtattgctgttgcccacggcaagatgagc
gagtctcgtcttgagcaaatcattgtggacttctgggagcgccgctttgacgtgctggtc
tgcaccaccatcgtcgaaaccggtctggatatatccaacgctaataccctgattgttgac
ggcgcccagaactacggtctgtctcagctgcatcagttgcgcggacgcgtggggcgcgga
cgcgagcgcgcgtacgcctacttcttgtacccggtggataagccactgggcgaggtggcg
cttgaacgtttgaaggctgtggctgctcacaatgagttgggtgctggtatgcagctggcg
atgaaggaccttgagattcgcggcgccggtaacttgttgggcggcgagcagtccggtcat
attgcgggcgttggtttcgacctgtatctgcgtcttgtaggcgaggctgttgcgaacttc
cgtggtgacactgaagaggcagcgcctgccgaggtcaagattgagttgcctattaacgcg
catatgccgcacgagtacgtgagttctgagcgtttgcgtctggcagcttaccgtgagatt
gcgcaggcaacttctgctgaagctcttgatgagattcgtgaagaactggttgatcgttac
ggtgcgattcctgagcctaccgagaacctttttcaggttgcactcttgcgcttgaaagct
agagaggttgcggtgcgcgagattcagcttatgggtcccaaggttcgtgtgttccccgtg
aacgatttgccggagtcacgcaaaatgcgtcttgaacgtatgtaccccggtgccctgtat
aagcagattcccggtaccgaggactggcaaattctgttgccgcgtcctaaaacggcgcgc
gtgggcggtaaagatcttgttgaccgcgagattattgattgggcagagagctttattgat
ttgatcttggctgaaaaagctccggttcagcagtaa
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