Rhodanobacter thiooxydans: LRK53_03710
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Entry
LRK53_03710 CDS
T08065
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRK53_03710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rth03019
]
LRK53_03710
Enzymes [BR:
rth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LRK53_03710
Messenger RNA biogenesis [BR:
rth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRK53_03710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
UJJ55516
LinkDB
All DBs
Position
875304..877055
Genome browser
AA seq
583 aa
AA seq
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MSQTILTDTFFANFDLHPLLQQGLDDSGFTRCTPIQEMTLPPALAGRDVAGQAQTGTGKT
CAFLVALMNRLLTTPAVAERKDSDPRALIIAPTRELAIQIDKDARNIGRHTGLKTALIYG
GVDYDKQRQQLKDGCDIIIATPGRLLDYHKQGVFSLNGVEVMVIDEADRMFDLGFIKDVR
FIFRKLPPREQRQVLLFSATLSHRVLELAYEHMHEAEKLVVESDHVTADKVRQVVYFPAK
EEKMPLLLNLIDRHQPTRSIIFVNTKAAAERVTERVKRHGCRVGAISGDVPQLKRQKLLQ
RFQEGQLDILVATDVAARGLHIPHVSHVFNYDLPHEAEDYVHRIGRTARLGAEGDAISFA
CDLYAMSLPDIETYIGQSIPVAAMEPELLVMPRPHAIDPEFAANAAADSAAFGDVVAPRP
GEKPRRSGGQGRGAERHAGGRGVARPPREHRPAVAEGRTVAANELPPAVAVHRSEAAPAT
GGDPAPEGARKPRRRRGGRNRRREGAPTDGVETTGRQPAVAEGNRAPRGERRPPRERGTA
ESAGIGHSRPSRQVAVTSGKPAEHAHPAKPSLFRRLTRLFTRR
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaaaccatactcaccgataccttcttcgccaacttcgatcttcatccgctgctg
cagcagggcctggatgacagcggtttcacccgctgcacgccgatccaggaaatgaccctg
ccgccggcgctggccggacgcgacgtcgccggccaggcgcaaaccggcaccggcaagacc
tgcgccttcctggtcgcgctgatgaaccgcctgctgaccaccccggcggtggccgagcgc
aaggacagcgacccgcgcgcgctgatcatcgcgcccacccgcgagctggccatccagatc
gacaaggacgcgcgcaacatcggccgccacaccggcctgaagaccgcgctgatctacggc
ggcgtcgactacgacaagcagcgccagcagctgaaggacggctgcgacatcatcatcgcc
acgcccggccggctgctcgactaccacaagcagggcgtgttcagcctcaacggcgtcgaa
gtgatggtgatcgacgaggccgaccgcatgttcgacctcggcttcatcaaggacgtgcgc
ttcatcttccgcaagctgccgccgcgcgagcagcgccaggtgctgctgttctccgccacc
ttgagccaccgcgtgctggagctggcctacgagcacatgcacgaggccgagaagctggtg
gtggagagcgatcacgtcaccgccgacaaggtgcgccaggtcgtctacttcccggccaag
gaagagaagatgccgctgctgctgaacctgatcgaccggcaccagcccacccgcagcatc
atcttcgtcaacaccaaggccgccgccgagcgcgtcaccgaacgggtcaagcgccacggc
tgccgcgtcggcgcgatttccggcgacgtgccgcagctgaagcggcagaagctgctgcag
cgtttccaggaaggccagctcgacatcctggtggccaccgacgtggccgcgcgcggcctg
cacattccgcacgtcagccacgtgttcaactacgacctgccgcacgaggccgaggattac
gtgcatcgcatcggccgtaccgcgcgcctcggcgccgagggcgacgcgatcagcttcgcc
tgcgacctgtacgcgatgagcctgccggacatcgagacctacatcggccagagcatcccg
gtggctgcgatggagccggagctgctggtgatgcccaggccgcacgcgatcgaccccgag
ttcgccgccaacgctgccgccgacagcgccgcgttcggtgacgtggtggcgccgcggccg
ggcgagaagccgcgccgcagcggtggccagggccgcggcgccgagcgccatgccggcggc
cgcggcgtcgcgcgtccgccacgcgagcacaggccggcggtggccgaaggccgcaccgtc
gccgcgaacgaactgccgcccgcggtggccgtgcatcgcagcgaggcggcgccagcgacg
ggcggcgacccggcccccgagggcgcgcgcaagccgcggcgtcggcgcggcggtcgcaac
cgtcgccgcgaaggcgcgccgaccgatggcgtcgagaccaccggccgccagccggcggtc
gccgagggcaaccgcgcgccgcggggcgagcgtcgcccgccgcgcgagcgcggcacagcc
gaatccgcgggcatcggccacagccggccgtcgcggcaggtcgcggtgacctcgggcaag
cccgccgagcacgcacacccggcgaagccgagcctgttccgccgcctgacccggctgttc
acccggcgctga
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