Rufibacter tibetensis: DC20_05500
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Entry
DC20_05500 CDS
T04099
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rti
Rufibacter tibetensis
Pathway
rti03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DC20_05500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rti03400
]
DC20_05500
Enzymes [BR:
rti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DC20_05500
DNA repair and recombination proteins [BR:
rti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DC20_05500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
RIOX1_C_WH
Motif
Other DBs
NCBI-ProteinID:
ALI98526
UniProt:
A0A0P0C138
LinkDB
All DBs
Position
1429852..1433208
Genome browser
AA seq
1118 aa
AA seq
DB search
MKATQFLELYRQDPVVQTVAQHLQTPEPQHIHLKGLVGSLDAVVASALQTMHPNTHLFIL
HDREEAAYFYSDLSNLLEDGQEVLLFPSSYKRAYQFDHTENANILLRAEVLNRLNDRAGA
GALIVTYPEALTEKVINKKSLVANTLGAKVGEKLDVNFLTEMLASYDFERTDFVYEAGQF
AVRGGIVDVFSYANELPFRLEMFGDEIESIRTFDPNTQLSVEQKKQISIIPNVQTKLLQE
TRESFLDFIPENSKVWVKDYRQTVEVVTESYEKAEQAFQEMLEASAGVQVVSNPEALFES
GKAFKKALERFTLVEFGKRFNFKSAQVVQFQAHPQPSFNKDFQRLVSNLHENQSKDYVNV
IAAESPRQADRLTTIFDELDHDVRFHHLMLALREGFVDDLVKLVCYTDHQLFERFYKHKT
REGFSKSKALTLKELRTLKPGDYVTHMDYGIGRFAGLEKVEVGGRLQEAIRLIYRDDDLL
YVSIHSLHKISKYTGKEGTPPTMSKLGSPEWENKKKRVKSKVKDIAAELISLYAKRKKAP
GYAFSRDGFLQAELESSFIYEDTPDQGKATEDVKNDMELPHPMDRLVCGDVGFGKTEVAI
RAAFKAACDGKQVAVLVPTTILAMQHYKTFRDRLEAFPVNVEYINRFKTTKQIKETLARV
AEGKTDILIGTHRLASKDVKFKNLGLLIIDEEQKFGVKTKDRLKEIKVNVDTLTLTATPI
PRTLHFSLMGARDLSVIATPPPNRQPVQTELHVFEDTLIRDAVAHELKRKGQVFFVHNRI
ADIEEMANLILRLVPDAKVTYAHGQMDPEELEKRMMRFVEGEYDVLVSTNIIESGLDIPN
ANTIIINRAHMFGLSDLHQMRGRVGRSNKKAYCYLLTPPVSGLPSDARKRLSTLEEFSDL
GEGFKIAMRDLDIRGAGNMLGGEQSGFINDLGFEAYHQILDEAVQELKETEFRDLFFKDV
ELEQLIEPVRECSVETDLEILIPDSYISNISERLQMYSKLDRVKDLESLEKIVEGMIDRF
GPMPPEVEQLVNIVKMRWEACHLGFEKLTLKKDTLKGYIPSLNNEAFFQSETFSRILQYV
QQHSRRSRLKEAKDKLIVTVENVSTLEQAKNIFEELQA
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagcaactcaatttttggagctgtaccggcaggaccccgtagtgcaaaccgtggcc
cagcacctgcagactcctgaacctcaacatatacatttgaaagggctggtaggtagctta
gatgctgtggtggcgtctgcgctacagaccatgcaccctaacacgcacctgttcatctta
catgaccgtgaggaagccgcttacttttacagcgatctttctaacctcctggaagacgga
caggaagtgctgctcttccccagctcgtacaagcgggcgtaccagtttgatcacacggag
aacgcgaacattctgctgcgggccgaggtgctgaaccgcctgaatgaccgtgcaggcgct
ggtgccctgattgtgacttaccctgaggcgcttacagaaaaagtcatcaataaaaaatca
ttggtggccaatacgctgggcgcaaaggtgggcgagaaactggacgtgaacttcctgacg
gagatgctggccagctacgactttgaacgcactgactttgtttatgaagccggccagttt
gccgtacgcgggggcattgtagacgtgttctcgtacgcaaacgaattaccgttccgcctg
gagatgtttggggatgaaattgaaagcatcagaacgtttgaccccaacacccagctttca
gtagagcagaaaaagcagatttccatcatccctaacgtgcagaccaaactgctgcaggaa
acccgtgagtcgtttctggactttattccggaaaacagcaaggtttgggtaaaagattac
cgccagacagtagaggtagttacagaatcttatgagaaggccgaacaggcgtttcaggag
atgctggaagccagcgccggcgttcaggttgtttctaacccagaggcactttttgaatca
ggcaaggcttttaagaaagccttggaaagatttacgctggtagaatttggcaagcgcttc
aatttcaagagtgcccaagtagtgcagttccaggcgcacccgcagccttcgtttaacaaa
gacttccagcggttggtgagcaacctgcatgaaaaccaaagcaaagactacgtaaacgtc
attgccgctgagtctccgcgccaagccgacaggctaaccaccatttttgacgaactggac
cacgacgtgcggtttcaccatctaatgctggcgctgcgcgagggttttgttgatgatttg
gtaaaactggtgtgctacacagaccaccagttgtttgagcgattctacaaacacaaaacc
cgcgaggggttctctaaatccaaagcccttaccttaaaagaactccgcacgcttaagccc
ggcgattacgtaacccacatggactacggcatcgggcggtttgcggggttggagaaagta
gaagtagggggccgtttgcaggaagcgatccggcttatttaccgtgatgatgatttgctt
tatgtaagcattcactcgctccacaaaataagcaagtacaccggcaaagaaggcacgccg
cctaccatgagcaaacttggctcacctgagtgggaaaacaagaagaagcgcgtaaagagc
aaggttaaagacattgccgccgagctcatttcgctttacgccaaacgcaaaaaagcgccc
ggttatgccttctcccgtgacggtttcctacaggcagagctggaatcttcattcatttac
gaagacaccccagaccagggcaaggctaccgaagatgtaaaaaatgacatggagctgccc
caccctatggaccggctggtctgcggagacgtgggcttcggcaaaacagaggtagccatc
agggcggcgttcaaagccgcctgtgacggaaagcaggtggcggttttggtgcctactacc
atcctggccatgcagcactataagacgttcagagaccgcctggaagcattcccggttaat
gtggagtacatcaaccggttcaagacgaccaagcagataaaagaaaccttggcgcgggtg
gcagagggcaaaaccgatattcttattggtacccaccgcctcgccagcaaagacgtgaag
ttcaaaaacctggggctcctgattattgacgaggaacagaaatttggggttaaaacgaaa
gacaggctgaaagagatcaaggtgaacgtagacacgctcaccctcaccgccacgcctatt
ccgcgcacgctgcacttctccttgatgggtgcccgtgacttatcagtgattgccacgccg
ccgcctaaccgccagccggtgcaaactgaactgcacgtgtttgaggacaccttgatcaga
gatgccgtggcccatgagctcaagcgcaaaggccaggtattctttgtgcacaaccgcatt
gcagacattgaagaaatggctaacctcatcttacgcctggtaccagacgccaaagttacc
tacgcccacgggcagatggaccctgaggagttggagaaacgcatgatgcgctttgtggaa
ggcgagtatgacgtattggtgagtaccaacattattgaaagcggcctggacatccctaac
gccaacaccatcatcatcaaccgggcgcatatgtttgggttgagtgatcttcaccagatg
cgcgggcgtgtgggccgttccaataagaaagcgtactgctacctgttaacgcctccggtt
tccggcttgccttcagatgcccgtaaacgcttgagtactttagaggagttctctgacttg
ggtgaaggcttcaagattgccatgcgtgacctggacatccgcggggcgggtaacatgctg
ggtggcgagcagagcgggttcatcaatgacctgggctttgaggcgtaccaccagattctg
gacgaagccgtgcaggaactaaaggaaaccgagttccgcgacctgttcttcaaagacgta
gaactggagcaattaatagaacctgtgcgcgaatgctctgtggaaaccgacctggagatt
ctgattccggattcatacatcagcaacatctctgagcgtttacagatgtacagcaagctg
gaccgcgtgaaagacctggagagtctggagaaaatagtagagggcatgatagaccgtttc
gggcccatgcctcctgaggtagagcagctggtgaacattgtaaaaatgcgctgggaagcc
tgccatctgggctttgagaagcttacgctgaagaaagacaccttgaaaggctacatccct
agcctgaacaatgaggcctttttccagtctgaaactttcagccgtattttacagtacgtg
cagcagcattcacgccgctcaaggttaaaggaagccaaagacaagcttattgtgaccgta
gaaaatgtctctacgctggagcaggccaaaaatatatttgaagaactacaggcataa
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