Rhodococcus triatomae: G4H71_04710
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Entry
G4H71_04710 CDS
T06846
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rtm
Rhodococcus triatomae
Pathway
rtm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rtm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G4H71_04710 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtm03400
]
G4H71_04710 (mfd)
Enzymes [BR:
rtm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G4H71_04710 (mfd)
DNA repair and recombination proteins [BR:
rtm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G4H71_04710 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
IstB_IS21
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QNG22425
LinkDB
All DBs
Position
complement(1018915..1022562)
Genome browser
AA seq
1215 aa
AA seq
DB search
MSSSATSTSSPGTPLAGLAAAALADPALTRVRDAVGQASLDIVAPAAVRPFVASAVAERT
QLLVVTATGREADDLAIELREMIGDGVAQFPSWETLPHERLSPSADTVGRRLEVLRRIAR
PDDRLYGPPLQVIVTTVRSLVQPMAPGLGEIEPVVLRAGVEHDFERLITRLVEMAYTRAD
MVGKRGEFAVRGGILDVFPPTADHPVRVEFWGDEITEIRSFSVADQRSIPEIEVETVLAT
PCRELMLTEDVRDRAAQLAKDNPADAALVEMLDKMAGGIPVEGMEALLPILRSGELQLLT
DVLPAQTHVLVCDPEKVRTRAADLMRTGQEFLEASWTAASIGADAPIDAAALGGDGIDLA
ASAYRSLRQVRDSAEASGRPWWTVSPLASGSGEEMELPVTAAPQVRGSDELLSELFVSLR
AHVSTGGRAAVVVAGAGTAQRALERLQDAEVPAARVEPGTQPPRGQVAVLCGSLHEGLVL
PGDASVPGLVVVAEADLTGNRVAQAGDGRRLPAKRRNQVDPLALTAGDMVVHDQHGIGRF
VEMVERTVGGARREYLVIEYAPSKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGSD
WANTKRKARKAVREIAGELVQLYAARQAAPGHAFGSDTPWQKEMEDAFPFQETQDQLTVI
SEVKGDMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTF
TERMASFPVTVGGLSRFTDPADSRQIIEGMADGEIDIVVGTHRLLQTGVRWKDLGLVIVD
EEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTY
VGSYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKRIRDLVPEARVVVAHGQMNEDR
LEKTVQGFWEREFDVLVCTTIVETGLDISNANTLIVERADALGLSQLHQLRGRVGRSRER
GYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAG
VGFDLYVRLVGEAVEAYRAAADGRPITTEEAPKEVRIDLPVDAHIPPDYVTSDRLRLEGY
RKLAAASDDESIGAVVDELVDRYGPLPEEVARLVSVAKLRLLAREYGLEEIAVVGTQIKI
SPMPLPDSKQLRLKRIYPSAQYRATTGMVQLPVPRGGSGGIGADRLRDVELLQYIADLIL
ALDGKAAGAVSMGMR
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctcgtccgccacgtccacgtcgtcaccgggaacaccgctcgcaggtcttgcggcg
gcggccctcgccgacccggccctgacccgggtccgcgacgcggtcgggcaggcctcgctc
gacatcgtcgcgcccgccgcggtgcggccgttcgtcgcgtccgccgtcgccgagcggacg
cagctgctggtggtgaccgcgaccggccgtgaggccgacgacctcgcgatcgaactgcgg
gagatgatcggcgacggagtcgcccagttcccgtcctgggagacgctcccgcacgagcgg
ctctcgcccagcgcggacaccgtgggccgacggctggaggtgctccgtcgtatcgcccgg
ccggacgaccggctctacgggccgccgctgcaggtgatcgtcaccacggtccgttccctc
gtgcagccgatggcgccgggtctgggcgagatcgaaccggtggtgttgcgcgccggtgtc
gagcacgatttcgagcgcctgatcacgcgcctcgtcgagatggcgtacacccgtgccgac
atggtgggcaaacgcggcgagttcgcggtacgcggcggcatcctcgacgtcttcccgccg
acggcggaccatccggtgcgggtggagttctggggcgacgagatcaccgagatccggtcg
ttctccgtcgccgaccagcggtcgatccccgaaatcgaggttgagacggtcctcgcgaca
ccgtgccgggagctgatgctcaccgaggacgtccgggaccgggccgcgcagctggcgaag
gacaatccggccgacgccgccctggtggagatgctcgacaagatggccggcggtatcccg
gtcgagggcatggaggcgctactgccgatcctgcgctcgggggagttgcagctgctcacc
gacgtgctgcccgcgcagacccacgtgttggtgtgcgacccggagaaggtgcgcacccgg
gcggcggacctgatgcgtaccggccaggagttcctggaggcctcctggaccgcggcctcg
atcggtgcggacgcacccatcgacgcggccgcactgggtggcgacggcatcgatctggcg
gcctccgcctaccgctcgctgcggcaggtccgggacagtgccgaggcctcggggcggccc
tggtggaccgtcagcccactggcatcgggcagcggcgaggagatggagctgcccgtcacg
gcggcaccacaggtacgcgggtcggacgagctcctgtccgagttgttcgtgagcctgcgc
gcgcacgtgagcacgggtggccgtgcggctgtcgtcgtcgccggtgccggtaccgcgcag
cgtgctctcgaacgcctgcaggacgccgaggtgcccgcggccagggtcgagccgggtacg
cagccaccgcgtgggcaggtcgccgtcctgtgcggctcgttgcacgagggactggtgctt
cccggcgacgcctcggtgccggggctcgtcgtcgtcgccgaggcggacctgaccggcaac
cgcgtcgcccaggccggcgacggcaggcggctgcccgccaagcggcgcaaccaggtggat
ccgctggccctcaccgcgggggacatggtggtgcacgaccagcacggcatcggccggttc
gtggagatggtcgagcgcaccgtgggcggcgccaggcgcgagtacctcgtgatcgagtac
gccccgagcaagcgtggtcatccgggtgaccggttgttcgtgccgatggagtccctcgat
cagctctcccgctacgtcggtggcgagttgccggcattgagcaagctcgggggctcggat
tgggccaacacgaaacgcaaggcccgcaaggcggttcgggagatcgccggtgagctggtg
cagctgtacgccgcccgccaggccgctcccggtcatgcgttcggctcggacaccccgtgg
cagaaggagatggaggacgcgttcccgttccaggagacgcaggaccagctgacggtcatc
tccgaggtcaagggcgacatggagaagccggttccgatggaccgcgtcgtcatcggtgac
gtcggatacggcaagaccgagatcgccgtgcgggcggcgttcaaggcggtgcaggacggc
aagcaggttgccgtcctggtgccgacgacgctgctggcgcaacaacatctgcagacgttc
accgagcggatggcgagcttcccggtcaccgtcgggggcctctcccggttcaccgacccc
gccgattcgcggcagatcatcgagggcatggccgacggcgagatcgacatcgtcgtcggt
acccaccggttgctgcagacgggcgtgcgctggaaggacctcgggctggtcatcgtcgac
gaggagcagcgcttcggtgtcgagcacaaggaacacatcaaggccctgcgcacgcacgtc
gacgtcctcaccatgtcggcgacgccgatcccgcgcacgctggagatgagcatggcgggc
atccgggagatgtcgacgatcctcaccccgccggaggagcggcacccgatcctcacctac
gtgggttcctacgcggacaagcaggtggctgccgcgatccggcgcgagttgctacgcgac
ggccaggtgttctacgttcacaaccgggtcagctcgatcgacaaggctgccaagaggatt
cgtgacctggtcccggaggcgcgggtggtcgtcgcgcacgggcagatgaacgaggaccgg
ctcgagaagacggtgcaggggttctgggaacgcgagttcgacgtgctggtgtgcaccacc
atcgtcgagaccggcctcgacatctccaacgccaacaccctgatcgtcgaacgcgccgac
gcactgggcctgtcacagctgcaccagctgcgcggacgcgtcggccgcagccgggaacgc
gggtacgcctacttcctgtacccgccggagaagccgctcaccgagaccgcgtacgaccgg
ttggccaccatctcgcagaactccgacctcggcgccggcatggcggtggcgatgaaggac
ctcgagatccggggcgccggaaacgtgctgggcgccgagcagtccggccatgtcgcgggc
gtcggtttcgacctgtacgtccggctggtcggcgaggccgtcgaggcgtaccgggccgcc
gccgacggtaggccgatcaccaccgaggaggccccgaaggaggtccgtatcgacctgccc
gtcgacgcgcacatcccgccggactacgtcaccagcgaccggctccggctcgagggatac
cgcaagctcgccgccgcgtcggacgacgagtcgatcggtgccgtcgtggacgagctggtc
gaccggtacggtccgctgccggaggaggtcgcgcgtctggtgtcggtcgcgaagctgcgg
ctgctcgcccgggagtacgggctcgaggagatcgccgtggtcggcacccagatcaagatc
tcgccgatgccactgcccgattcgaagcagttgcggctcaagcggatctacccgagcgcc
cagtaccgggccaccaccgggatggtgcagctgccggtgccccggggcgggtcgggtggc
atcggggcggatcggttgcgggatgtcgaactgctgcagtacatcgccgacctgattctc
gccctcgacggcaaagccgcgggtgcggtgtcgatggggatgcgatga
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