Rhodococcus triatomae: G4H71_05705
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Entry
G4H71_05705 CDS
T06846
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rtm
Rhodococcus triatomae
Pathway
rtm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rtm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G4H71_05705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtm03400
]
G4H71_05705
Enzymes [BR:
rtm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G4H71_05705
DNA repair and recombination proteins [BR:
rtm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G4H71_05705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Big_4
Motif
Other DBs
NCBI-ProteinID:
QNG22597
LinkDB
All DBs
Position
complement(1207230..1209521)
Genome browser
AA seq
763 aa
AA seq
DB search
MARRGSDGKQRIEIGGRALAVTNLDKVLYPEADTTKGQVIEYFTEIAPAMLPHLADRAVT
RKRWPDGVDHEPFFEKNLPTSAPEWIERHAIEHSHRYVQYPVLDSVAALAWAGQQAALEL
HVPQWRFVGGDRGPVTRLVFDLDPGSGVGLPECAAVARAIRDLVRELGWTAYPVTSGSKG
LHVYVPLDRHLAPDGASTVAKQVAVGLETLLPEQVTATMAKSVRPGKVFVDWSQNNPSKT
TIAPYSLRGRAQPWVAAPRSWAELDDPELRQLGYEEVLERFRADGDLLEGLDPPVAEPDR
LHTYRGMRDRARTPEPVPDTVHPHGADDTFVIQEHHARRLHYDFRLERDGVLVSWAVPKN
LPTTPAENHLAVHTEDHPVEYASFSGTIPKGEYGAGSVEIWDTGTYETEKWRDDEVIVRL
DGSRVSGRYALIRTNGNQWLVHRTKDQGAVRAPSGRAPFPHDITPMLATPGPVEGLDATD
WVFEGKWDGVRVIAEFDAGNLQLRSRIGRDKLRDYPALGRLSEVLAGHDVVLDGEVVAFD
AHGVASFSLLQDGAPPEYLAFDILYLDGVSLLRKSYSDRRRVLEALAAKVDGLNVPAPLD
GPADEALAASRAAGWEGVVAKRRESVYLPGKRGRSWIKVKNWHTQEVVIGGWRKGRGARS
GSLGSLLLGLPGVDGLEYIGKVGTGFTDRELTHLMSALSQLERKTSPFAGELPAAERRDA
VWVTPTLVGEVRYMDWTEAQRLRHTSWRGLRDDKTPGEVRRSR
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgccgcggcagtgacggcaagcagcggatcgagatcggtggcagggccctggcc
gtgaccaatctcgacaaggtgctgtatccggaggccgacaccacgaaggggcaggtgatc
gagtacttcaccgagatcgccccggcgatgctgccccacctcgccgatcgcgccgtgacg
cgcaagcgctggccggacggggtcgatcacgaaccgttcttcgagaagaacctcccgacc
tcggccccggaatggatcgaacggcacgcgatcgagcattcgcatcggtacgtgcagtac
ccggtgctggactcggtcgcggcgctcgcgtgggccgggcaacaggccgctctcgaactg
catgtgccacagtggcgattcgtcggcggagaccgggggcccgtcacccggctggtgttc
gatctcgatcccggttcgggggtgggcctgccggaatgtgcggcggtggcccgcgcgatc
cgggacctggtgcgcgaactgggatggaccgcctatccggtgaccagcggcagcaagggc
ctgcacgtgtacgtgccgctcgaccgacacctcgccccggacggcgcgtcgacggtggcg
aagcaggtagcggtcggcctggagaccctgctccccgagcaggtcaccgccacgatggcc
aagtccgtccgtccggggaaggtcttcgtcgactggagccagaacaatccgtcgaagacg
acgatcgccccctactcgctgagggggcgggcgcagccctgggtcgcggcaccgcggagt
tgggccgaactggacgatccggaactgcgccagttgggctacgaggaagtgctggagcgg
tttcgggccgacggggatctgctcgaggggctcgacccaccggtggccgagccggaccgg
ctgcacacctatcgcggcatgcgggatcgtgcgcgtactcccgagccggttcccgacacg
gtccacccacacggtgccgacgacaccttcgtcatccaggagcatcacgcacggcgactg
cactacgacttccgcctcgaacgggacggagtgctggtgtcctgggccgtgcccaagaat
ctgcccacgacaccggcggagaaccatctcgcggtgcacacggaggatcatcccgtcgag
tacgcgagcttttccggcacgatcccgaagggcgagtacggcgcgggatcggtggagatc
tgggacaccggtacctacgagaccgagaagtggcgcgacgacgaagtgatcgtgcgactc
gacggctcacgggtgagcgggcgctatgcactgatccgcacgaacgggaaccagtggctg
gtgcaccgcaccaaggatcagggtgccgtgcgtgcaccctccggccgagccccgttcccg
cacgacatcacgcccatgctcgcgacgccgggacccgtcgaggggctcgacgcgacggac
tgggtgttcgagggcaaatgggacggcgtgcgggtgatcgcagagttcgatgccggaaat
ctccagctgcgcagccggatcgggcgggacaagctgcgcgactatccggcactggggcgg
ctgtccgaggtgctggcggggcacgacgtcgtcctcgacggcgaggtggtggccttcgat
gcgcacggagtggccagcttctcgctgctccaggacggtgcgcctccggagtatctcgcg
ttcgacatcctgtacctcgacggggtgtcgctcctgcgcaagagctacagcgatcggcgg
cgggtgctcgaggcgttggcggccaaggtcgacggactgaatgttcctgctccactggac
ggtccggccgacgaggccctcgccgcgagccgtgcggcggggtgggagggggttgtcgcg
aagcggcgggagtcggtgtacctaccgggcaagcgcggcagatcgtggatcaaggtgaag
aactggcacacccaggaggtggtgatcgggggctggcggaagggtcggggcgcccggtcc
ggcagcctcggatcactgttgctgggtctccccggcgtggacggactggagtacatcggc
aaggtgggaaccggattcaccgaccgggagctgacccacctgatgtcggcgctgtcccag
ctcgaacggaagacgagccccttcgccggcgaactgccggccgccgaacgcagggacgcg
gtgtgggtgacgccgacgctcgtcggggaggtgcggtacatggactggaccgaggcccag
cggctacggcacaccagttggcggggcctgcgtgacgacaagacacctggggaggtgcgt
cggagcaggtga
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