Rathayibacter tritici: A6122_1751
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Entry
A6122_1751 CDS
T04388
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rtn
Rathayibacter tritici
Pathway
rtn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6122_1751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtn03021
]
A6122_1751
03019 Messenger RNA biogenesis [BR:
rtn03019
]
A6122_1751
Transcription machinery [BR:
rtn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
A6122_1751
Messenger RNA biogenesis [BR:
rtn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A6122_1751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
AAA_22
Spore_III_AA
NACHT
VWA_2
Motif
Other DBs
NCBI-ProteinID:
AND16882
UniProt:
A0A160KSY9
LinkDB
All DBs
Position
complement(2000595..2002931)
Genome browser
AA seq
778 aa
AA seq
DB search
MTDVNTHGSTVDLTADLSALRVAELQALATRLGLGGASKLRKGELVQAISDLRAATAEDT
PAADVVAPDDAALTLDVAAVALDVEATGVAPDVDATGIEAEPADVAEQSAPEPEAPAELP
TAVESTEADTADVLEQVAPTVEEPAVTVAESAPLELQLPAAAEQVAEPAERTPRRRSSRR
ASSGTVAAGEHVNIPGGSGVESLIPDLPVIEQDRDADQAAKSVIDIELPNGPEPEDSSRE
GGQRERRGRRRSRGGSAEQNDQAEQAPAENDADSSDSGDQQEQQNGDQQQNGDQQGTGRG
RNRRNRNRNRGEDRQNDAQQSPAAQSQPQNGQGSRAAQAEGQQAPQQQNGSGQQQNGQQA
EGEDGRRSRYRDRKRRGGAVGDDIEPEIGEDDVLIPVAGILDVLDNYAFVRTTGYLPGVS
DVYVSLGQVKKYNLRKGDAVVGAIRQPREGEGGGRQKYNAIVKVDSINGQSVEEAAARVE
FQKLTPLYPTERLRLETEPGKLTQRIIDLVAPIGKGQRGLIVAPPKAGKTIVLQQIANAI
VQNNPEVHLMVVLVDERPEEVTDMQRTVRGEVVASTFDRPAEDHTTVAELAIERAKRLVE
LGHDVVVLLDSITRLGRAYNVTAPASGRVLSGGVDASALYPPKKFFGAARNIENGGSLTI
LATALIETGSKMDEVIFEEFKGTGNMELRLSRHLADKRIFPAVDVNASGTRREEMLLSAD
EVKITWKLRRALAGLDQQQALEIILSRLKETTSNVEFLMQVSKSAVGPTTAGHGNGHH
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
gtgacagacgtcaacacccacggctcgaccgtggatctcaccgccgacctctcggccctg
cgggtcgccgagctccaggctcttgcgacgcgcctcggcctcggcggtgcctccaagctc
cgcaagggcgagctcgtccaggcgatctcggacctccgcgccgccaccgcggaggacacg
ccggccgccgatgtggtcgctccggacgatgccgcgctcaccctcgatgtcgcagcggtc
gcgctggacgtcgaggcaaccggcgtcgctcccgatgtcgacgccaccggcatcgaggcg
gagccggccgacgtggccgagcagtccgctcccgagcccgaggcgccggcggagctgccg
acggccgtcgagagcaccgaggccgacacagccgatgtgctcgagcaggtcgcgcccact
gtggaggagccggccgtgaccgtcgccgaatctgccccgctcgaactccagcttcccgcc
gccgccgagcaggtcgcggagcccgccgagcgcaccccgcgccgccgcagctcgcgacgc
gcctccagcggcacggtcgccgccggcgagcacgtcaacattcccggcgggagcggcgtc
gagtcgctgatccccgatctgcccgtcatcgagcaggatcgcgacgccgaccaggccgcg
aagtccgtgatcgacatcgagctgcccaacgggccggagccggaggactcctcccgagag
ggcggccagcgcgagcgtcgtggacgccgtcgcagccgcggcggcagcgctgagcagaac
gaccaggccgagcaggcgcccgccgagaacgacgccgactcctccgactccggcgaccag
caggagcagcagaacggcgaccagcagcagaacggcgaccagcagggcacgggccgcggt
cgcaatcgccgtaaccgcaaccgcaaccgcggggaggaccgtcagaacgacgctcagcag
agccccgccgcgcagtcccagccgcagaacggccagggctcgcgcgccgcacaggccgag
ggtcagcaggctccgcagcagcagaacggctccggccagcagcagaacggccagcaagcc
gagggcgaggacgggcgccgaagccgctaccgcgaccgcaagcgccgtggcggagcggtc
ggcgacgacatcgagcccgagatcggtgaggacgacgtcctgatcccggtcgccggcatc
ctggacgtcctcgacaactacgccttcgtgcgcaccaccggctacctgcccggcgtcagc
gatgtctacgtctcgctcggccaggtcaagaagtacaacctgcgcaagggcgacgcggtc
gtcggcgccatccgccaaccccgcgagggcgagggcggcggacgccagaagtacaacgca
atcgtcaaggtcgattcgatcaacggccagagcgtcgaggaggccgcggcgcgggtggag
ttccagaagctcaccccgctctacccgaccgagcgcctgcgcctcgagacggagccgggc
aagctgacccagcggatcatcgacctggtcgccccgatcggcaagggccagcgcggcctg
atcgtcgcaccgcccaaggccgggaagaccatcgtcctgcagcagatcgccaacgcgatc
gtgcagaacaaccccgaggtccacctcatggtcgtcctggtcgatgagcgtccggaggag
gtcaccgacatgcagcgcaccgtccgcggcgaggtggtcgcctccaccttcgaccgcccg
gccgaggaccacacgaccgtcgccgagctcgcgatcgagcgcgccaagcgcctggtcgag
ctgggccacgacgtcgtcgtgctgctcgactccatcacccgcctcggccgtgcctacaac
gtgaccgcgccggcctcgggtcgcgtgctctcgggcggcgtggacgcctcggcgctgtac
ccgccgaagaagttcttcggagcggcgcgcaacatcgagaacggcggctcgctgaccatc
ctcgcaacggcgctcatcgagaccggatcgaagatggacgaggtgatcttcgaggagttc
aagggcacgggcaatatggagctgcggctctcgcgccacctcgccgacaagcggatcttc
cccgccgtcgacgtgaacgcgtccggcacccgccgcgaggagatgctgctcagcgccgac
gaggtcaagatcacctggaagctgcgccgcgccctcgccgggctcgaccagcagcaggcg
ctggagatcatcctgtcgcgcttgaaggagacgacgtcgaacgtcgagttcctgatgcag
gtctcgaagtcggcggtcggcccgaccaccgccggccacggcaacggccaccactag
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