Rathayibacter tritici: A6122_2623
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Entry
A6122_2623 CDS
T04388
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rtn
Rathayibacter tritici
Pathway
rtn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rtn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A6122_2623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtn03400
]
A6122_2623
Enzymes [BR:
rtn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A6122_2623
DNA repair and recombination proteins [BR:
rtn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A6122_2623
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AND17737
UniProt:
A0A160KVI6
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Position
3011730..3014225
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AA seq
831 aa
AA seq
DB search
MGAQQVVVVGGRRLRLTNLEKVVYPEAGLTKADVLAYYAAVARAMLPHLARRPITRKRWV
DGVGTTEHPGEVFFEKNLPSSAPYWLSRTRLAHSSRDVEYPLVDDVAGLTWLAQQAAIEL
HVPQWRVGSDGERRPPDRLVLDLDPGEGAGLAECAEVAFLARDLLEGMGLAPLPVTSGSK
GIHLYCPLDASASSDQISAVAHELARVLESDHRDLVVSDMKKTLREGKVLVDWSQNSAAK
TTIAPYSLRGRVRPAAAAPRTWEELGAEGLRHLAPDEVVERLRSDGDLLRPLLAARGAGL
EPTPERMAGFAATDASSDRLATYRSMRDASKTPEPVPEAGVVGSSSGDTFVIQEHHARRL
HYDFRLEHDGVLVSWAVPKGPPLEGDANRLAVQTEDHPLEYATFEGTIPAGEYGGGDVRI
WDEGSYALEKWREGKEVIAVLTGRPDGGLGGEPRRYALLHTGSTAGAEKNWLLHLMAPGA
AHGAQRRGRPGAPAASPAPRPAPSANRPSEAAPARHHRPMLATAGRRSDVDPGAAIEMKW
DGYRALVRVQGGTAILTSRNGNDLTAAFPDLLGPLADAAADAVLDGEIVALDSRGRPDFG
ALQTRGGLTKPREIEAAARDTPVHLMLFDLLERDSVDLTGRDYDTRRATLVDLVAENERV
HVPSVFDGDLAEAMATSRTLGLEGVVAKRRDSRYQEGRRSRDWIKLTHHRLQEVVIVGWR
EGEGGLQGSVGALLTAIPGDDGLAYSGRVGTGFSDRERRGLIDRLAEHATDEPAVSVPPL
ESRGVHWVSPVLVGEVRYRERTASGTLRQPVWRGWRADKAAAEVRVEEPEG
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgggggcgcagcaggtcgtggtggtgggcgggcggaggctgcggctgacgaacctcgag
aaggtcgtctacccggaggcgggcctcaccaaggccgatgtgctcgcctactacgcggcg
gttgcccgagcgatgctgccgcatctggcgcgccgccccatcacccgcaagcgctgggtg
gacggagtgggcaccaccgagcacccgggcgaggtcttcttcgagaagaacctgccctcc
tccgccccctactggctgagccggacccggctcgcgcactcgtcgcgcgacgtcgagtac
ccgctggtcgacgacgtcgccgggctcacctggctcgcgcagcaggccgcgatcgagctg
cacgtcccccagtggcgggtgggatccgacggcgagcgccgcccgcccgaccgcctcgtg
ctcgacctcgacccgggcgagggcgcaggcctggccgagtgcgccgaggtcgcgttcctc
gcccgtgacctgctggaggggatgggcctggcgccgctgccggtgaccagcgggagcaag
gggatccacctctactgcccgctcgacgcctccgcctccagcgaccagatctcggcagtc
gcgcacgagctggcgcgggtgctcgaatcggaccaccgcgatctcgtggtctcggacatg
aagaagaccctgcgcgagggcaaggtcctcgtcgactggagccagaacagcgcggcgaag
acgaccatcgcgccgtactccctccgcggccgcgtccgtcccgccgccgccgcgccccgc
acctgggaggagctgggcgccgagggcctgcgccacctcgcgcccgacgaggtggtggag
cgcctgcggagtgacggcgacctcctccggccgctgctcgccgcccgcggtgccgggctc
gagcccaccccggagcggatggcgggcttcgccgcgacggacgcctcctcggaccggctc
gcgacctaccgcagcatgcgcgacgcgtcgaagacgccggagccggtgcccgaggcggga
gtggtgggctcctcctccggcgacacgttcgtcatccaggagcaccacgcgcggcgcctg
cactacgacttccggctggagcacgacggcgttctggtcagctgggccgtgccgaagggt
ccgccgctggagggcgatgcgaatcggctcgcggtgcagaccgaggaccatccgctggag
tacgcgaccttcgagggcaccatcccggccggcgagtacggcggcggggacgtgcgcatc
tgggacgagggcagctacgccctggagaagtggcgcgaggggaaggaggtgatcgcggtg
ctgaccggccgccccgacggcggtctcggcggcgagccccgccgctacgcgctgctgcac
accgggtcgacggcgggcgctgagaagaactggctgctgcacctgatggcgccgggcgct
gcccacggggcgcagcgacggggccggccgggcgcgcccgccgcgtcgcccgcaccccgc
cccgcaccctccgcgaaccgcccaagcgaggccgcacctgcgcgccaccaccgccccatg
ctcgccaccgccggacgcaggagcgacgtggatcccggggccgcgatcgagatgaagtgg
gacggctatcgcgccctcgtgcgggtgcagggcggcacggcgatcctgaccagccgcaac
ggcaacgacctcaccgccgcgttcccggatctgctcggaccgctcgccgacgccgctgcc
gacgccgtgctcgacggcgaaatcgtcgccctcgactcccgcgggcgccccgacttcggt
gccctgcagacccgcggcgggctgacgaagccgcgcgagatcgaggccgccgccagggac
actccggtgcacctgatgctgttcgatctcctggaacgcgacagcgtggacctgaccggc
cgcgactacgacacccgccgcgcgaccctggtcgacctcgtcgccgagaacgagcgcgtg
cacgtgccgtccgtcttcgacggcgacctggcggaggcgatggcgaccagccgcaccctg
ggcctggagggggtggtcgccaagcgccgcgactcgcgctaccaggagggcaggcgctcg
cgcgactggatcaagctcacccaccaccggctgcaggaggtcgtgatcgtgggctggcgc
gagggcgagggcggcctgcagggctcggtcggcgcgctgctcaccgcgatccccggcgac
gacggcctcgcttactccggccgcgtcggcaccggcttcagcgaccgcgagcgccgcggc
ctcatcgaccggctggccgagcacgccaccgacgagcctgccgtctccgtccctccgctc
gagtcgcgcggcgtgcactgggtgtcgcccgtgctggtcggcgaggtccgctaccgcgag
cgcaccgcctccgggacgctgcggcagccggtctggcgcggctggcgcgccgacaaggcc
gcggcggaggtgcgcgtggaggagccggagggctga
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