Ruminococcus torques: RTO_17120
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Entry
RTO_17120 CDS
T02606
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rto
Ruminococcus torques
Pathway
rto03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RTO_17120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rto03400
]
RTO_17120
Enzymes [BR:
rto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RTO_17120
DNA repair and recombination proteins [BR:
rto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RTO_17120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
AA_kinase
IstB_IS21
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
CBL26284
UniProt:
D4M4X2
LinkDB
All DBs
Position
1781534..1784890
Genome browser
AA seq
1118 aa
AA seq
DB search
MQAFLEPLKELADYQEIVSSRRKKTGFLQIAGCVNSQKIHLAKALSDGFEYRVIVFSSEE
KAKQAYEEWRVLEENVWFYPARDLLFYHADIKGAFLTGKRMEVLRAIVEKKGREAITVVT
TMDAFLDGLPSKEELYGNRIKIHAEEALDFQKLQENLSILGYERENQVESPGQFAVRGGI
LDVFPLTEENPVRIELWGDEVDSIRSFDVESQRSTENLQEIEIYPATENWKQMETESFLA
YFPVKETILFLDEPVRLQESAEIVEKEYFHSLESREEAGIEADEIPIQVEQTDHTIGKMN
KYYGIAFTMLESKCGMFKIRSVYSLQVKTVNPYNSSFELLTRDLKKLKRTGYRVILVSGS
RTRAKRLAEDLRDYDLSSFYSEEMERQVNPGEIMVTCGYIAEGYEYPMLKFTVISESDIF
GKKKKKKKRKTYEGKKIQEFAELKPGDYVVHENHGLGIYQGIEKVEVDAVTRDYMKISYA
DGGILYIPATQMDLIQKYAGADAKPPKLNKLGTPQWKKTKGQVKKAVQLIAKDLVKLYAT
RQQTEGYVYGPDTVWQREFEEMFPFEETEDQLRAIEDTKKDMESTKIMDRLICGDVGYGK
TEIAIRAAFKAVQEGKQVVYLVPTTILAQQHYNTFIQRFKDFPVRVDLMSRFRTQAQQKK
TVEDLKKGLVDIVIGTHRVLSKDIGYKDLGLLIIDEEQRFGVTHKEKIKKLRENIDVLTL
TATPIPRTLHMSLIGIRDMSVLEEAPMDRMPIQTYVMEYNDEMVREAIERELARGGQVYY
VYNRVENIADLALRVQKLVPDARVSYAHGQMNEHQLEDIMYDFINGDIDVLVSTTIIETG
LDIANANTMIIQDADRFGLSQLYQLRGRVGRSNRMAYAFLLYQRDKMLKEVAEKRLAAIR
EFTDLGSGFKIAMRDLEIRGAGNLLGESQSGHMAAVGYDLYCKMLNEAVSQLKGEKEEAD
YTTTIDLDIDAFIPESYIKNEYQKLDIYKRIATIETEEEMDDMTEELIDRFGDLPKKVQQ
LLHIAALKSLAHSAYITAIEQKGKDYKFILYEKANLDPAKIPALLKKYGNNMTFKAEAVP
YFLYQKKGRSGKEKGENVLQMLREIIESIRELRLDQGS
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcttttttagaaccattaaaagaactggctgattatcaggagattgtcagttcg
agaagaaagaaaacgggtttcctgcaaatcgcaggatgtgtgaattcacagaagatacat
cttgcgaaagcactgagcgatggctttgagtacagagtcatcgttttttccagtgaagaa
aaagcaaaacaggcttatgaagaatggcgtgtactggaggaaaatgtatggttttatccg
gcaagagatcttttgttttatcatgcagatattaagggtgcatttttgacagggaaacgt
atggaagtattgcgtgcgattgtagagaagaaaggacgggaagcaattactgtagttaca
acaatggacgcatttctggatgggcttccatcgaaagaagaactgtacgggaacaggatt
aagattcatgcagaagaggcgctggattttcagaaattacaggaaaacctttcgatatta
ggatatgaaagggaaaaccaggttgaaagtccgggacaatttgcagtcagaggtgggatt
ctggatgtatttccactgacagaggagaatccggttcgaattgaattatggggagatgaa
gttgattctattagaagttttgatgtggaaagtcagaggtcgacagagaatttacaggaa
atagaaatctatccggcaactgagaactggaagcagatggaaacggaaagctttttggca
tattttccggtaaaggagacaatcttgtttttggatgaaccggtacgtcttcaagaatct
gcagaaatcgtagaaaaagagtactttcacagcttggagagcagagaagaagcaggtatc
gaggcagatgagattccgattcaggtagaacagacagatcatacgattggaaagatgaat
aagtattatggaattgcatttaccatgttggaatcaaaatgtggaatgtttaaaataagg
tctgtctacagtctgcaggttaaaactgtcaatccgtataatagcagctttgagctcctg
acacgagatctgaagaaactgaaaagaacagggtatcgcgtgattcttgtttcgggctca
agaacaagagcaaaacgtcttgcagaagatctgagagattatgacctgagcagtttttac
agtgaagagatggaacggcaggtgaatccgggagagattatggtaacctgtggttatatt
gcagagggatacgagtatccaatgttaaagtttacggtcatctcggaatctgatattttt
ggtaagaaaaagaaaaaaaagaaaagaaaaacttatgaaggaaaaaaaatccaggaattt
gccgaacttaaaccgggagactatgtggtacatgagaatcacggacttggaatttatcag
gggattgagaaagtcgaagtagatgctgttactcgggattatatgaaaatttcctatgcg
gacggaggaattctatatataccggcaacacagatggatctgatccagaaatacgcagga
gcagatgcaaagccaccgaaattgaataagcttggtacacctcagtggaaaaaaacaaaa
ggacaggtaaaaaaagcggttcagttaatcgcaaaagatcttgtaaaactctacgcaacg
cgccagcagacagaaggttatgtttatggaccggatacggtctggcagagagagtttgag
gagatgtttccatttgaagagacagaggatcagcttcgtgcaattgaagatacaaagaaa
gatatggaaagtacgaagatcatggatcgtctgatctgcggagatgtagggtatggtaag
actgaaattgcgataagagcagcttttaaggcggtgcaggaagggaaacaggttgtttat
cttgtacctacaacgattcttgcgcagcaacactataatacatttattcaaaggtttaaa
gattttccggtgcgtgttgacttgatgagccgttttcggacgcaggcgcagcagaaaaaa
acagtagaggatttgaaaaaaggtctggttgatatcgtgatcggaacacacagagtgctt
tcaaaggatattggatataaagatttaggacttctgatcatagatgaagaacaacgtttt
ggtgtgacgcataaggaaaaaattaaaaaattaagagaaaatatagatgtgctgacgctg
acagcaacgccaatcccaagaacacttcatatgagtttgatcggaattcgcgatatgagt
gtgcttgaggaagcaccgatggatcgtatgccaatacagacgtatgtaatggaatacaat
gatgagatggttcgtgaggctattgagcgtgaacttgccagaggtggacaggtctattat
gtttataacagagtagaaaatattgcagatctagcacttcgtgtgcagaaactggtgccg
gatgcaagggtatcttacgcgcatggacagatgaatgaacatcagttggaagatattatg
tatgattttatcaatggtgatattgatgtgcttgtatcgacaacaattattgaaacagga
ctggacattgcgaatgctaatacgatgattatacaggatgcagatagatttggactgtcg
cagttatatcagttgcgaggaagagttgggagatccaatcgaatggcatatgcatttctg
ttgtatcagagggataagatgcttaaagaagttgcagagaagaggctggctgcaattcgt
gaatttacagatcttggatcgggattcaagatcgcaatgcgtgatcttgagatccgaggt
gcgggaaatcttctaggagagtcgcaaagtggtcatatggcagcagttgggtatgacttg
tactgcaagatgcttaatgaggctgtcagtcagttgaaaggtgaaaaagaagaagcagac
tatactacaacgattgatcttgatatagatgcatttattccggaatcttacattaaaaac
gagtatcaaaaattggatatttataagaggattgccacaattgaaacagaagaagagatg
gatgatatgacagaagaactgattgatcgttttggagatcttccgaaaaaagtacagcag
cttcttcatattgcagcacttaagagtcttgcgcattctgcatatattacagcgatagaa
caaaagggaaaagactacaaatttatcttatatgaaaaagcaaatctggatccggcaaaa
attccggcacttttaaagaaatatggaaataatatgactttcaaagcagaagcagtcccg
tatttcctttatcaaaagaaagggagaagtggaaaagagaaaggggaaaatgttctgcaa
atgctaagagaaattatagagagtattcgcgaacttcgattagatcagggaagttga
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