Rhincodon typus (whale shark): 109912289
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Entry
109912289 CDS
T06055
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X3
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109912289 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtp03041
]
109912289 (ddx46)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109912289 (ddx46)
Spliceosome [BR:
rtp03041
]
Complex A
U2 snRNP components
U2 related factors
109912289 (ddx46)
Complex B
109912289 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
109912289
NCBI-ProteinID:
XP_020367284
LinkDB
All DBs
Position
12:complement(44130950..44354742)
Genome browser
AA seq
1039 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPAEKRSKLGDIRGRSRSRERDRRRDRSRSRDRRR
SRSRERKRLRIPQRCRMSVVTPKRSRSRERRRSRSREKRRSVSRSRSRRSHSQPRSRSRS
KSKERRSKSKDRVEVTNEAVKEKKKEEKDDDKDVSNFEQSKLEEEMRKRKERVEKWREEQ
RKKVVENIGEIKRELEEMKQGKKWSLEDDDDDEDEIIEGERKEEGDDDNEELDPLDAYME
DIKEEVKKFNMGSVKGGSEKKSGATVMKVMTVVTTKKPHSDMEKKKGELMENDQDAMEYS
SEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMTAEEVNAYRL
ELEGIAVRGKGCPKPIKSWVQCGISMKILSSLKKQGYEKPTPIQAQAIPAIMCGRDVIGI
AKTGSGKTIAFLLPMFRHIMDQRPLEESEGPVALISTPTRELALQITKECKKFSKALGLR
VVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNFRRVTYVVLDEADRMF
DMGFEPQVMRIVENIRPDRQTVMFSATFPRAMEALARRILTKPIEVQVGSRSVVCSDVEQ
HVIVIEEENKFLKLLELLGHYQENGSVIVFVDKQEHADGLLKDLMRAAYPCMSLHGGIDQ
YDRDSIINDFKTGVCRLLVATSVAARGLDVKHLILVINYSCPNHYEDYVHRVGRTGRAGN
KGYAYTFITEDQVRYAGDIIKALELSGNAVPLELEKLWDDFKEQQKAEGKTIKKSSGFSG
KGFKFDETEQVLANERKKLQKAALGLQDSDDEDTAVDIDEQIESMFNSKKRVKDMAMPGA
ANVQVPSAGNAEKLEIAKRLALKINAQKNLGAEAQVIQDVMQQATNAIMRGRTLQAPTVS
AKTIAEQKAEKINAKLNYVPAEKQDDEKPENAQTESFKRYEEELEINDFPQTARWKVTSK
EALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESASELAVQKAKAEITRLIKEE
LIRLQNSYQPTNRGRYKVL
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgggcagagagtccagacattatcggaagcgatctgcatcacgaggacgttctggaagt
cggtccagaagtcgttcacccgctgagaagcggtctaaacttggggatattagaggtcgc
tcacgcagccgagaacgtgatcggagaagggatcgctctcgaagtcgagataggagacgg
tcaagatctcgggaaaggaaacggctcagaataccgcagagatgcagaatgtcagtggtc
acaccaaaacgttccaggagtcgagagagaaggagatctcgcagtcgtgaaaaacgacga
tcagtaagccgaagcagaagccgtaggtcacattctcaaccacgctctcgaagccgcagt
aagagcaaggaaagaagatcaaaatctaaagaccgtgtagaagtcaccaatgaggctgtc
aaagagaagaaaaaggaggagaaagatgacgacaaagatgtcagtaattttgagcaaagt
aaattggaagaggaaatgagaaaacggaaagaacgtgttgagaaatggagagaagaacaa
cgcaaaaaggttgttgaaaatattggtgaaataaagagagaacttgaagagatgaaacag
ggcaagaaatggagccttgaggatgatgacgatgatgaagatgaaataatagaaggtgaa
aggaaagaagaaggagatgatgacaatgaagaattggatccattagatgcttatatggaa
gatataaaggaagaagtgaagaagtttaacatgggaagcgtgaaaggaggaagtgaaaag
aaatcaggtgcaactgtaatgaaagtcatgactgtggtaactactaaaaaaccacattct
gatatggagaaaaagaaaggagagctgatggagaatgaccaggacgcaatggagtattcc
tcagaggaggaagaagttgatcttcagactgcactgacagggtatcagacgaagcagagg
aagctactggaacctgtggatcatgggaaaatagaatatgaaccattccgaaagaacttt
tatgttgaagttcctgaacttgctaaaatgactgctgaagaagtgaatgcatacagattg
gagttagaaggaattgcagtacgtggcaaaggttgtccaaaacctattaaatcatgggtg
caatgtgggatctctatgaagatattaagttcattgaaaaaacaagggtatgagaaacca
acaccaattcaagcacaggcaatccctgccatcatgtgtggacgtgatgtaattggaatt
gctaaaactggaagtggaaaaactatagcttttcttttgcctatgttccgacacatcatg
gatcagaggccacttgaagaatcagaaggtcctgttgcactcatttctacccccacccgt
gagttagcccttcagattaccaaagaatgcaaaaaattctcaaaagcacttggactgagg
gtagtgtgtgtttatggtggaacaggaataagtgaacagattgctgagctaaagcgagga
gcagaaattatagtttgcacgccgggccgcatgatagacatgctagcagccaataatggt
cgtgtgacaaattttcgcagagttacctatgttgtacttgatgaagcagatagaatgttt
gatatgggttttgagccccaggtaatgcgaatagtagaaaatattcgaccggacagacaa
acagttatgttttctgctacatttcccagagcaatggaggccctagcacgacgaatatta
acaaaacctattgaagtgcaagtgggcagtaggagtgttgtttgctctgatgttgagcaa
catgtgattgttatagaggaggagaacaagtttttaaagttgctggaacttttaggccat
taccaagaaaatggctctgtcatagtgtttgtggacaaacaagagcatgctgatggtcta
ttaaaggatctgatgagggcagcctacccctgcatgtcattacatggaggtattgatcaa
tatgatcgtgatagtataatcaatgatttcaaaacgggagtgtgtcgattgcttgtggca
acatcagtagcagctcgagggctggatgtgaaacatctgattcttgttatcaattacagt
tgtcccaatcactatgaagattatgtacatcgagtaggacgtactggaagggcaggtaac
aaaggttatgcttatacattcataactgaagatcaagtccgttatgcgggtgatataatt
aaagccttagaattatcgggaaatgctgttccacttgagctggaaaagttgtgggatgat
ttcaaagagcaacaaaaggcagaaggaaaaactattaagaagtctagtggtttttcaggg
aaaggttttaagtttgatgaaactgaacaagttctagcaaatgagagaaagaaactacag
aaagctgctttgggtttacaagattctgatgatgaggacactgccgttgatattgatgaa
cagattgagagcatgtttaattccaagaagcgtgtaaaggatatggcaatgccaggagcc
gctaatgttcaagtgccatctgctggtaatgcagagaaactggagattgctaagaggttg
gctttgaaaatcaatgcccagaaaaatcttggtgcagaagctcaggtaattcaggatgta
atgcagcaggcgacaaatgctattatgagaggccgcactctccaagctccaactgtatct
gctaaaacaattgcagagcagaaagcagagaagatcaatgccaaactcaattatgtacca
gcagagaagcaagatgatgagaaaccagaaaatgcacaaacggaatcgttcaagagatat
gaggaagagctcgagatcaatgatttcccacagactgccaggtggaaggtaacctccaag
gaagctcttcagaggattagtgaatattcagaagctgctatcactattagaggcacttac
tttcctccagggaaagagcccaaagaaggcgagcggaaaatctaccttgctatagaaagt
gccagtgaactggctgttcagaaagctaaagctgagattacaagacttattaaagaagaa
ctcattagactgcaaaattcataccagccgaccaaccgtgggcgatacaaggttttgtag
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