Rhincodon typus (whale shark): 109920046
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Entry
109920046 CDS
T06055
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03013
Nucleocytoplasmic transport
rtp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109920046 (upf1)
03015 mRNA surveillance pathway
109920046 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109920046 (upf1)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109920046 (upf1)
5.6.2.5 RNA 5'-3' helicase
109920046 (upf1)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109920046 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
109920046 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
UvrD-helicase
AAA_16
SRP54
UvrD_C_2
AAA_22
AAA_25
Motif
Other DBs
NCBI-GeneID:
109920046
NCBI-ProteinID:
XP_048477474
LinkDB
All DBs
Position
Unknown
AA seq
856 aa
AA seq
DB search
NKLEELWKDNPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE
SQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIK
VPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIY
HKLLGHEVEDVIIKCQLPKRFTAHGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS
ATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHHTGLKVVRLCAKSREAIDSPVSFLALH
NQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGD
PRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQ
SLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQP
DKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSY
LVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVA
LTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNT
INPGARFMTTAMYDAREAIIPGSVYDRSGQGRPSNMYFQTHDQIGMIGASPSHVAAMNIP
IPFNLMMPPMPPPGYFGQANGPAAGRGIAKGKVGRGARQRNRGMGNQLNSQSNLPNSQAS
QDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTY
QGERAYQHGVTGLSQY
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
aacaaactggaggagctctggaaggataatccttctgctacccttgaggacctggagaaa
cctggagtggatgaagagcctcagcatgtactacttcgttacgaagatgcttatcaatac
cagaacatcttcggtccactggtcaagctggaggctgactatgacaaaaagctaaaggaa
tcacagactcaggacaatatcactgtaagatgggatctgggtctgaacaagaaaaggatt
gcatacttcaccttgcctaagacggactctgacatgcgcctgatgcagggtgatgagatc
tgtctgcgctacaagggtgacctggcacctctttggaaaggaatcggccacgtgatcaaa
gtcccggacaattatggggatgagatcgctattgaactacgcagtagtgttggagctcca
gttgaagtaactcacaacttccaggtggattttgtgtggaaatcaacttcatttgacaga
atgcagagtgctttaaaaacctttgctgtggatgagacttctgtgtctggctacatatac
cacaaactgcttggccatgaggtggaggatgtgattattaaatgccagctgcccaaacgc
ttcactgcccatggtttacctgaccttaatcactcacaggtttatgctgtgaagactgtc
ctccagcgtcctctcagtctgatccaaggccctccaggcactgggaaaactgtcacttct
gctactatagtttatcatctggccaggcaaggcaatggccctgtcctggtgtgtgctccg
agtaatattgcagtggaccagttgactgagaagatccatcatacaggtctgaaggtggtg
cgtctctgtgccaagagtcgggaggccattgattcaccagtctctttcctagctctacac
aatcagatccgtaacatggatagtatgcctgaactgcaaaagttgcagcagttaaaggat
gagactggcgagttgtcatctgcagatgagaaacgctaccgtgctctcaaaaggacagct
gagcgggaactgctgatgaatgcagatgttatttgctgtacctgtgtaggagctggtgac
ccacgcctggctaagatgcagttccgttctattctcattgatgagagcacacaggccaca
gagcctgaatgtatggtccctgtggtgctgggagcaaagcagctgatcctggtgggtgac
cattgccagcttggtccagtggtaatgtgtaagaaagctgctaaagctggtctgtctcag
tcgctgtttgagcgtctggttgtcctggggatccgaccaattcgtctgcaggttcaatac
cggatgcatccagctctcagtgcctttccatccaatatcttctatgagggctcactgcaa
aatggtgtcacagcagcggatcgtgttaagaaaggcttcgatttccaatggccacagcca
gacaaaccaatgttcttctatgtaacccagggccaggaggaaattgctagttcagggacc
tcctacctcaataggactgaggcagccaatgtagagaagatcaccaccaaattgctgaag
gcaggtgctaagccagatcaaatcggcatcatcacaccatatgagggacagcgatcctac
ctggtgcagtacatgcagttcagtggctcccttcacaccaaactctatcaggaggtagaa
attgccagtgttgatgcattccaaggccgagagaaggacttcatcatcctatcgtgtgtc
cgagccaatgagcatcaaggcattggatttctcaatgacccacggcgactgaatgttgcc
ctcacaagagcgagatatggtgtgattattgtgggaaatccaaaggctctgtccaaacag
ccactgtggaatcacctgctgaattactacaaagagcagaaagtgctggtggagggacca
ctgaacaatctccgcgagagtctgatgcagttcagcaaaccacggaagcttgtcaacacc
atcaatccgggagcccggttcatgacgacagctatgtacgatgctcgagaagctatcatc
ccaggctctgtatatgacaggagtggccagggtcgtccatccaacatgtactttcaaact
catgaccagattgggatgattggagccagccccagtcacgttgctgcaatgaacatcccc
attccctttaacctgatgatgcccccaatgccaccacctgggtactttggacaagcaaat
ggaccagcagcaggtcgtggaatcgcaaaaggaaaagtgggccgtggggctcgtcaacga
aaccgtggcatggggaaccagctgaacagccagtcgaatctgcccaacagccaggccagt
caggatgtggtgtctcaaccattctctcaggggcctctgacccagggatacatctcaatg
agccagccctctcaaatgagccagcctggcctttctcagccagaactctctcaggatagt
tacctgggagatgagttcaagtctcagattgacgtggccttgtcgcaggattccacttac
cagggcgaacgtgcatatcaacatggggtgactgggctgtcacagtactag
DBGET
integrated database retrieval system
