Rhincodon typus (whale shark): 109926736
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Entry
109926736 CDS
T06055
Symbol
kdm1a
Name
(RefSeq) lysine-specific histone demethylase 1A
KO
K11450
[histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase [EC:
1.14.99.66
]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtp03036
]
109926736 (kdm1a)
Enzymes [BR:
rtp01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.99 Miscellaneous
1.14.99.66 [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase
109926736 (kdm1a)
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
BRAF-HDAC complex
109926736 (kdm1a)
REST complex
109926736 (kdm1a)
Histone demethylases
109926736 (kdm1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Amino_oxidase
SWIRM
NAD_binding_8
DAO
AlaDh_PNT_C
Pyr_redox
Thi4
Pyr_redox_2
Pyr_redox_3
FAD_binding_3
HI0933_like
GIDA
FAD_binding_2
2-Hacid_dh_C
Lycopene_cycl
MurD-like_N
MRPL52
Motif
Other DBs
NCBI-GeneID:
109926736
NCBI-ProteinID:
XP_048468880
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All DBs
Position
27:10113842..10167924
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AA seq
916 aa
AA seq
DB search
MMMLSAAAAAAAAAAKKNEERPSSGPEGLEAPAEGGGGGGGGGGLALAAAAAAAERTPKK
KERASPHSSSSNEGTMEGGTAETPDGRRTSKRKRAKVEYREMDESLANLSEDEYYSEEER
NAKAEKEKKQVPPPQPPPPEEEIESDPEEPSVHWSNINLAGSIAGVEGAAFQSRLPHDRM
TSQEAACFPDIISGPAQTQKVFLYIRNRTLQLWLDNPKVQLTFEVTHQQLESPYNSDAVL
VHRIHSYLERHGLINFGIYKRVKPLPTKKTGKVIIIGAGVSGLAAARQLQSFGMDVTVLE
ARLSLGFLIRYFRNFYIQFEFQGAIQGPQDIAMNKDVQDSESIMWNFSSIDLNIMSGLSD
TLLLIDLLPDDLLTTETGIEFLVSKTVLLIVHLSISKLWSLGQGTNNFFSRFLSMPFTDV
WNLMLLQGERCTNVPKEKDEMVEQEFNRLLEATSYLSHQLDFNYLNNKPVSLGQALEVVI
QLQEKHVKDEQIEHWKKIVKTQEDLKELLNKMVSLKEKIKELHQQYKEASEVKPPRDITA
EFLVKSKLRDLTALCKEYDELAEAQVKLEEKLQELEANPPSDVYLSSRDRQILDWHFANL
EFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYT
ASGCEVIAQNTRSNSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAIQRMGF
GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIME
NISDDVIVGRCLAILKGIFGSSAVPQPKETVVTRWRADPWARGSYSYVAAGSSGNDYDLM
AQPVTPGPSIPGAPQPVPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGAMYTL
ARQATPGIPTQQPSSL
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgttgtcggcggcggcggcagcggcggcagcagcagcgaagaagaatgaggag
aggccgagctccggccccgagggtctggaggcgccggcggagggaggtggtggtggtgga
ggtggaggaggcctggccttagcagcggcggcggccgccgccgagcggaccccgaagaag
aaagagcgagcgtctccccacagcagcagcagcaacgagggcaccatggagggaggcacg
gcagagaccccggacggccggaggaccagcaaacgcaagcgagctaaagtggagtacaga
gagatggatgagagcctggcaaacctatctgaagatgaatattattcagaagaggaacgc
aatgcaaaggctgaaaaagaaaagaagcaggtgccaccaccgcagccacctccacctgaa
gaggaaattgaaagtgatccagaagaaccatctgtgcattggagcaacatcaatctggca
gggtcgatcgcaggtgttgagggtgctgctttccagagtcgcctacctcacgatcgcatg
acttcacaggaagcagcctgtttccctgacattatcagtggtcctgcacagacccagaag
gtgtttctatacatcagaaaccgcacattgcagctctggctggacaaccctaaagtgcag
ttaacctttgaggtaactcatcagcagctggagtctccatataacagtgatgctgtacta
gttcacaggatacacagctacttggagcgccatgggttaattaactttggtatctacaaa
cgggtgaaaccacttccaacaaagaagacagggaaggtgataattattggtgctggagtg
tcgggtctggcagcagctcgccagctacaaagctttggaatggatgtcactgtactggag
gcaagattatcattgggattcttgatcagatacttcaggaatttctacattcagtttgaa
tttcagggagcaattcagggcccccaagacatagcaatgaacaaagacgttcaggacagt
gagtcgatcatgtggaatttcagtagcattgacttgaatattatgtctggtctctctgac
acactccttctaattgacttgttgccagatgatttgctcacaacggaaacagggattgag
tttttggtgagcaaaactgtcctgttaattgtacatttgagcatttcaaaattgtggtca
ctgggtcaaggcactaataactttttctcccgttttctttctatgccatttaccgatgtt
tggaatctgatgctattgcagggagaaagatgcacaaacgttcccaaggaaaaagatgag
atggtagagcaggaattcaatcgtttgcttgaggccacatcttatcttagtcatcagctg
gacttcaactatttgaataataaacctgtatcattaggacaggcactggaagttgtcatc
caattgcaagaaaagcatgtgaaggatgaacagattgaacactggaagaaaatagtgaaa
acgcaagaggatctgaaagaattgcttaataagatggtttcgttgaaggaaaagataaaa
gagctacatcagcagtacaaagaagcctctgaggtaaagcccccacgtgacatcacagcg
gaatttctggtgaaaagtaaattgagagatctaactgcgttatgcaaggaatatgatgag
cttgcagaagcccaagtgaaacttgaggagaagctccaggaattggaagctaacccgccc
agtgatgtttacctgtcatcaagggaccggcagatcctggactggcattttgccaacttg
gaattcgctaatgcaacacctctctccacactttcattgaagcattgggaccaggacgat
gactttgaattcacaggaagtcacttaacagtacgaaatggttattcttgtgtcccagtt
gcacttgcagaaggtcttgacattaaattaaatacagctgttcgacaagtccgttatact
gcctcaggatgtgaagtcattgctcagaatactcgttcaaacagccagacattcatttac
aagtgtgatgcagttttatgcactcttccactgggtgtgttgaagcaacaacctccagcg
gttcagtttgtacctcctcttccagaatggaaaacttctgccattcagcgtatgggcttt
ggaaatctgaacaaggttgtattatgttttgatcgtgtattctgggaccccagtgtaaat
ctctttggtcatgttggaagcactactgctagtaggggagagttgtttcttttttggaac
ctttataaagccccaatcctattggctctagtagctggagaggcagctggaatcatggaa
aatattagcgatgatgtcattgtcggtcgttgtctggccattctaaaaggaatatttggc
agtagcgcagtcccacagccaaaggagactgttgtaactcgctggcgggctgacccatgg
gcacgtggttcctattcctatgtggctgctggctcttctggtaatgactatgatctaatg
gcacaaccagtgaccccaggccccagcatccctggggctcctcagccagtccctcgtctc
ttctttgctggagagcacactattcgcaactaccccgcgacagttcatggtgctttattg
agcggattaagggaagccggtcgaattgctgatcagtttctgggtgcaatgtacactctc
gcacgacaagcgacgcctggtatccctacacaacaacccagtagcctgtaa
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