Rhincodon typus (whale shark): 109931668
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Entry
109931668 CDS
T06055
Symbol
frem1b
Name
(RefSeq) FRAS1-related extracellular matrix protein 1b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109931668 (frem1b)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Big_9
Lectin_C
Calx-beta
UL45
Motif
Other DBs
NCBI-GeneID:
109931668
NCBI-ProteinID:
XP_020386520
LinkDB
All DBs
Position
10:complement(38026694..38215009)
Genome browser
AA seq
2152 aa
AA seq
DB search
MLLNLLTLIISNIQHTEADGLVYLNGGIIVGRGQHTYVTDNDLQFNISKTKDSCKVEVVL
NEPITQRVGKLTPQVFDCHFLPHEVKYTHNGCPLLKEDNVMLRIYRFTESQTFMETFLLN
VQITEPKSSIIKLGLVGLQVHEFYGTSNPIDKSVVSFKYNANTICTVKILSMEGNVPAHG
QLIVDDPSFRGQGQLRDDALKQNVRKVRQAKITCPNKKACLTGVKEVRFLKANCEEFLAM
GLKYQHLSPPSPDTDYIPIRVEVRDERTRFLLQAENVWIQVNIKGAIPNQQPKAAFMSMY
ILEVDQFILTPLSVAAIDADDDETPKNRLVFNITKPPIEGYLTHLDDHTKPITSFTWQDL
HEMKIAYQPSNISHAERRNYEVDFKAIDTFFEVSASITVHFSIRTAETNAPRVSWNMGLD
LLEGQSRPITWENFQIVDNDNINAVRLIAVEGLQYGRLTVRGGKGFMCTIEDIKEGVVRY
HHDDSDTTKDYIVFRIFDGKHITRHKFPINILPKDDSPPFLINNLAFELAEGTSILIENH
MLLSSDLDSSDDYILYKIIVPPKAGEIVKKTLSDLLGHPVTSFLQRDLLRGLIYYHHSGG
EIFEDSFEFVLLDSHEPPNLSDPQVTMIHIMPVKDQLPKEVDGTTRYLITKETEINHITK
SHLRFTDTESPENELLYIISKPCFFPTNQRMYDAGKIIFTDSAKNMKKDPSVPMLRSFTQ
HAVNHMKVAYMPPLEDIGPHPLLVQFVFSVNDQQGGTLTGIVFNITIIPEDNQPPEIFTN
EIKAEEGSSCMITADNLMVTDKDTVDEDLRIQLKQKPQHGDIELQGGIMQEGDMFTLDDL
KSFQVRYKHDDSETLHDLVVFTATDGFNTADEVLKVKVIPINDEPPELQPHLKSGLQCPE
GEKVIITSEYLYATDIDSNDTKLTYMIARSPSFGLIRRKDVTVDKFSQLDIIQGLISYWH
TGGEIGYSPCMDTVTVIVSDAEAGTVDSCCYDGPLPPPVPLHGSLPFYDLNITVMPVNNQ
PPTIQVGDTFAVDEASQASLVLEFLSAIDEDTIAEELVFVLESLPLFGYLENTLPSPGYE
KSNAGINIASFSLQHLRAGYINYIQCRHNQMEPTADHFMVSVSDAVHKSIAVPFYVIINP
INDETPDLQLGNITIMEGDICVIGPGVLNAVDLDIPQDTLIFSVIRPPAHGMLLNGIFGN
DVAKYRQMNAEVLQHDLRVHSFSMDELKQGMKLMYMHDDTETLKDNFTIQLTDGKHTVQK
TVHVSIILVNDEKPVILKNVGLQVEVGENKVISSVALEAEDKDTPRFKLYYVINTVPTFG
QLQFKTESEWIHLYPSMTFSQEDIDLNRVWYLHTTIMGSKGHDSFRFHVTDGDNSSPSQT
FHILLKNLNKGGIVVLTKAVTLKEGDRVTLTTDVLKATDGTGKPEELLYAISVPPAHGQI
EYINYPGVAISSFSQLEVAAQKVCYVHDNSREASTDGFRFFVSNGMTVKNSSMQFNIEHT
DRIMPTLVNNKGLQLPDGAKLVISPDNLQLSDPDTPLMNLTYIIIQPPQYGNIYLKENIL
SQAHFTQLNVNNLDISYKHNAGSSELDHFTFIASDGTNHGFLVNGQMREEPVIFRLQVEH
VDKVSPYILINQCPTTVHNLKDGRFGIYITAQNLKSSDVDSKDEELIYTILRPPYYGYLE
STTSGGYIQGSFTQKEVDRRTIRYIISPSIELTSDSFEFKVSDTAGNSNAPEIMELKWSR
IEMSASCYTVCEDIGTLSIKVTRKGYSVDPSYIGITVQGLSATVGRDFSHSSASLIQFDP
GISIKVWNIFIHDDGLEENNEKLKVQLKTPVNAILGQKDISLVEIVDLHGGRCDQTNLRT
RGDDNNSHMDSRLSELTKTSANLPTDKKEDIFNEGERLFSEPDQHWNHDTHPPRGDVPHK
DHFLDNYRTRIRDDVSPVTPSTQLQAFGSSRVIPPSSIQRKNGEIVWTYHGMVPIRVEEG
KFPHFSQTREYQAPDLFQKDLPSEDENTQSFSNDGQANQQMECPSGWTQHKKHCYILNPV
RNTTWEGAEMACRQMLHANLVSVHSKKELKWLWNFARRQSFWIGLIEETGSGKWAWTNGR
PVTFTNWKKNEPSIRRNIQHRCTLVQGRGKWVTKQCNEEKDRYICCTSVSRP
NT seq
6459 nt
NT seq
+upstream
nt +downstream
nt
atgcttctaaatttgttaacactgataatttccaacattcaacatactgaagcagatgga
cttgtttatctgaatggagggattatagttggtagggggcagcatacatatgtgacagac
aatgacctacaattcaacatttccaaaaccaaagactcctgcaaagtcgaggttgtattg
aatgaacctataacacaacgagttggaaaattaactcctcaggtttttgactgccatttc
ctccctcatgaagtgaagtacacccataatggctgccctctgctgaaggaagataatgtg
atgctaaggatctatagattcacagaatctcagacctttatggaaacatttcttttgaat
gtacaaattacagaaccaaaatccagtataatcaagcttggattggttggccttcaggtt
cacgagttttatgggacatcaaatcctattgacaaaagtgttgtgtctttcaaatacaat
gcaaacacaatttgtacggtaaagattttatcaatggagggcaatgttccagcccacgga
cagcttattgttgatgatccaagctttcgtggccaaggacagttacgggatgatgcactg
aagcagaatgttagaaaagtaagacaggctaaaattacatgtcccaacaagaaggcttgc
ctcactggcgttaaggaggtgcggttcttaaaggctaattgtgaagagttcctagcaatg
gggctgaaatatcaacacctcagtccaccatctcctgatactgactatattccaattaga
gtggaagtcagagatgaaaggaccagattcctccttcaggcagaaaatgtttggattcaa
gttaacattaaaggtgcaattccaaatcagcaacccaaagccgccttcatgtcaatgtat
atcctggaggttgatcaattcattttgacaccattgagcgttgcagctattgatgcagat
gatgatgaaacaccaaagaacaggctggttttcaacataaccaagcctcctatagaagga
tacttaactcacctggatgaccacaccaaaccaatcacatctttcacctggcaggattta
catgaaatgaaaatagcatatcaaccttctaacattagtcatgctgaaaggaggaattat
gaggttgattttaaagcgatagacacattttttgaagtcagtgcttccatcacggttcat
ttttcaatcagaacagcagagacaaatgcaccaagggtttcttggaacatgggtctggac
ttattagaaggtcagtctcgacctattacttgggaaaattttcagatcgtagacaatgat
aatattaatgctgtacgtttaatagcggtggaaggactgcagtatgggcggctcaccgta
agaggtggcaaaggattcatgtgcaccattgaggacattaaggaaggagttgtgcgctat
caccatgacgatagtgatacgaccaaggattatattgtattccgaatcttcgatggcaaa
cacattactagacacaagtttccaattaacattttacccaaagatgacagccctcccttc
ttaattaacaaccttgcttttgaactagcagaaggaacatctatattaatagaaaaccat
atgctactgtcttccgatttggattcaagtgatgattacatactgtataagattatagtt
ccacccaaagctggagagattgtgaaaaaaactttatcagatctactgggtcatcctgtg
actagttttctacagcgggatctgttacgtggtttgatttattatcatcattctgggggt
gaaatttttgaggattcgtttgaattcgttctgttggatagccatgagcctccaaatctt
tcagaccctcaggtaacaatgattcatataatgccagtgaaggaccagctaccaaaagaa
gttgatggtaccacacgttatttgataacaaaagaaactgagattaaccacatcactaaa
agtcatctccgcttcacagacacagaatccccagagaatgaattgttgtacattatcagt
aaaccctgttttttcccaacaaaccagagaatgtacgatgcaggcaaaataattttcaca
gacagtgcaaagaatatgaagaaggatccttctgtccccatgttgagatcgtttacacag
catgcggtgaaccacatgaaagtagcatacatgcctcctctcgaggatatagggcctcat
ccgttattggtgcagttcgtattttctgtcaatgatcagcaaggaggcactttgactgga
attgtctttaacatcaccattattcccgaggacaaccaaccacctgagattttcacaaat
gaaataaaagctgaggaaggttcaagctgtatgatcactgcagataatctgatggtgaca
gataaggacacagttgatgaggatctccgaattcagttgaaacaaaaaccccagcatgga
gatattgaactgcaaggaggcatcatgcaggaaggggatatgtttacacttgatgacctc
aaatcctttcaagtcaggtacaaacatgatgattcagaaacactgcatgatttagttgtg
tttacagctacagatggatttaacactgcagatgaggtgctgaaagtaaaggttatacca
atcaatgatgaacctccagagctacagccacatttgaaatctggtctccaatgtcctgag
ggagaaaaggtcatcatcacctctgaatatctttatgctacagatattgacagtaatgac
acaaagctgacatatatgatcgctcgttcaccatcatttggactgataagaagaaaagat
gtcacggttgacaaattctcacaactggatatcatccaaggtttaatctcctattggcac
accggtggtgaaataggatatagtccttgcatggatactgtcacagtaattgtatctgat
gcagaagcaggcacagtggacagctgctgttatgatggacctcttccaccaccagtgcca
cttcatggctctctccctttctatgaccttaacatcactgtgatgccagtcaacaatcaa
cctcctacaattcaagttggggatacatttgcagttgatgaagcatcgcaagccagcttg
gtattagaatttctatctgccatagatgaagacacgatcgcagaggaactagtctttgtg
ctggagagtttacccctgtttggatatctagagaacactctcccatcaccggggtatgaa
aaaagcaatgctggaataaacatagcttccttcagtctgcagcacctcagggcaggctac
atcaactacatccaatgcagacataaccagatggagcccacagctgaccactttatggta
tctgttagtgacgctgtacataaatctatagcagtgccattttatgtcatcatcaaccca
atcaacgatgaaactccagatttgcagctgggaaacatcacaataatggagggtgatata
tgtgtgattggccctggagtgctgaatgcagtggatctggatatacctcaggatacactg
atcttctctgtgattagacctccggctcatggaatgcttctgaatggcatctttggaaat
gatgttgccaaatacaggcaaatgaatgctgaagttctacaacatgatctgagggtacat
agctttagcatggatgaactcaaacaaggaatgaagcttatgtacatgcacgatgacaca
gaaaccttgaaggataattttaccattcaattaacagatggcaagcacacagtacaaaag
acagttcatgtcagcattatattggtcaatgatgagaagccagttattttaaaaaacgtt
ggtttgcaagtggaagtgggggaaaacaaagttatttccagtgtggctttagaagctgaa
gacaaggacacaccacgattcaagctttactatgtcatcaatactgttcccacatttgga
cagctacaattcaagactgaatctgaatggattcatctatatcccagcatgacctttagt
caagaagatatagacctgaaccgagtctggtatctacacacaactattatggggtcaaaa
ggtcatgacagttttcgctttcatgttacagacggggataactcctcaccttcacagact
tttcatattttgcttaagaacttgaataaaggtggcattgttgtcctcaccaaggctgta
actttaaaagagggtgacagggtcaccttgacgacagatgttctcaaggcaacagatggc
actggcaaacccgaagagctattgtacgccatctctgtgccacctgcacatggtcagatc
gagtacatcaattatcctggagtggccatttccagtttcagccagttggaggtagcagcc
cagaaggtctgctatgtccatgacaacagtcgtgaggccagcacagatggatttagattt
tttgttagcaatgggatgacagttaaaaacagctcgatgcagtttaacattgagcacact
gaccgtatcatgcctactctagtcaataataaaggtcttcagttaccagatggggccaag
ttggtcatctctcctgacaatcttcaactctcagatccagacactcccttgatgaaccta
acttacattattatccagcctcctcagtatggcaacatctacctgaaagaaaacattctt
tcccaggcccacttcacacagttgaatgtgaataatttggacatttcatacaagcacaat
gctgggtcctctgagcttgaccattttacgttcattgcttctgatggaaccaatcatggc
tttttagtcaatggccagatgagagaggagcctgttatattcagattacaggtggagcat
gttgacaaggtttctccctatatcctcatcaatcaatgtccaaccacagttcacaatctg
aaagatggacgctttggtatctacatcactgcccagaacttaaaatcctcagacgtagac
agcaaagatgaggagctgatctacacaattctccgtccaccttactatggatacttggaa
agtactacttcaggtggatacattcaaggctcatttacccagaaagaggtggacagacgt
acaattcgctacatcatcagtccctccatagaactgacatctgacagctttgagttcaaa
gtatctgacactgcaggaaactctaatgcaccagaaataatggaactgaaatggtccagg
attgaaatgtctgcaagctgctatacagtctgtgaggacattggaactctctccataaag
gttaccaggaaaggatacagcgttgatccctcttacattggtataacggttcaagggtta
tcagctacagttggcagagacttctcacatagctcagcgagtttaattcagtttgatcct
ggtatttccattaaggtgtggaatatttttattcatgatgatggacttgaagagaataat
gaaaaattgaaagtgcagctgaagacaccagtgaatgccatccttggacagaaggacatc
tctttggtagaaattgtagatttgcacggaggtaggtgtgatcagactaatttgagaaca
agaggagatgataataacagtcatatggacagtcgtttaagtgaactcacaaagacatct
gccaacttacccactgataaaaaggaagatatattcaatgagggagaaagattattctca
gagcctgatcagcactggaatcatgatactcaccctccaaggggcgatgttcctcacaag
gaccattttttggacaattatagaacacggatcagagatgatgtttctccagtaactccc
agtacacaacttcaggcttttggaagcagcagagtgattcctccctcatcaattcagaga
aagaacggggagattgtgtggacataccatgggatggtgccaataagagttgaagaagga
aaatttcctcacttctctcaaaccagagaatatcaggcaccagacttgttccaaaaagac
ctcccatctgaagatgaaaacactcaatcattcagcaacgacggtcaggcaaatcaacaa
atggaatgtccttcaggctggacccagcacaagaaacattgttatattctgaatcctgtg
agaaatacaacctgggaaggagctgaaatggcctgtaggcaaatgcttcatgctaattta
gtcagtgtacattccaaaaaggaactgaaatggctttggaactttgccagaagacagtca
ttttggattggcttaatagaagagactggttctggaaaatgggcatggactaatggaaga
ccagtaacctttacaaactggaagaaaaatgaaccttcaataaggagaaacattcagcat
agatgcactcttgtccagggtagaggcaaatgggtgactaaacagtgtaatgaagaaaag
gataggtacatctgctgtacttctgtatcaagaccttaa
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integrated database retrieval system
