Rhizobium tropici: RTCIAT899_CH17050
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Entry
RTCIAT899_CH17050 CDS
T02432
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
rtr
Rhizobium tropici
Brite
KEGG Orthology (KO) [BR:
rtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rtr03016
]
RTCIAT899_CH17050
Enzymes [BR:
rtr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
RTCIAT899_CH17050
Transfer RNA biogenesis [BR:
rtr03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
RTCIAT899_CH17050
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
AGB72773
LinkDB
All DBs
Position
complement(3450725..3451321)
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AA seq
198 aa
AA seq
DB search
MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDVDGRTADEIVDRLDR
IDRPEFQLRLEGIGSFGSKKPHSVWAGVSQTPDMFALQGEIERICQRIGLQPDPRKFTPH
VTLARLKSSRVDDVVHYLSGRGNFYTQPFTVGRFVLLSSRESVGGGPYLTEEIFPLHEPR
SAFPTLGNSALQPAKSMV
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atgccgagactttttaccgccctcgaaattccgcgcaatgcggccatgagcctgtcattg
ttgcgcggtggtctcccgggagccaggtggatcgacgttgaaaattatcatattaccttg
cgcttcatcggcgatgtcgatggccgcacggcggatgagatcgtcgaccggctggaccgg
atagatcgaccggaattccagcttcggctggagggcatcggttccttcggctccaagaaa
ccgcattcggtttgggcgggggtctcgcagacaccggatatgttcgcgctgcaaggcgag
atcgagcgcatctgccagaggatcggcctgcagccggatccacgcaagttcacgccgcat
gtgacgctcgccaggctgaagtcctcgcgggtcgacgatgtcgtgcactatctctccggc
cgcggcaatttctacacccagcccttcacggtcgggcgcttcgtgcttctgtcctcgcgc
gaatctgtcggcggcggtccttatctcaccgaagagatattcccgcttcacgagccccgc
agcgcgttcccaactttgggcaacagcgcgctgcaaccggccaagagcatggtatag
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