Rhizobium tropici: RTCIAT899_PB00395
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Entry
RTCIAT899_PB00395 CDS
T02432
Name
(GenBank) putative ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rtr
Rhizobium tropici
Pathway
rtr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RTCIAT899_PB00395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtr03400
]
RTCIAT899_PB00395
Enzymes [BR:
rtr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RTCIAT899_PB00395
DNA repair and recombination proteins [BR:
rtr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RTCIAT899_PB00395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AGB73381
LinkDB
All DBs
Position
pRtrCIAT899b:complement(67740..68804)
Genome browser
AA seq
354 aa
AA seq
DB search
MTTRRKASMPLLDESGSTLQSRQVRKRDPAQPSLPFDPMPERIEPCLALLKPTPPKGADW
LFEVKWDGYRLALHIHRKDVKVITRGGHDWTHRFPAIVDAARALGVNSAILDGEAVVLDN
QGRSDFGALQRSLGGRGGKKASDEAILYAFDLLYLDGHDLTGTELSVRRHLLEDLISPTS
DGAVRLSQEMALDGEVLLEHACRAGLEGIIAKHRDRPYRSGRTGDWQKIKCIQSESFMVV
GYEQSSSARGGIGSLLLAARKGYDWAYVGSVGTGFNTKDAEYLRKTLDKLKTARPVVPLK
GKNLVFAQPTIIAEIEFRGWTHDGSLRHASYKGLREIQDNAAVFDIAERPAPSE
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaagacgcaaagcctcgatgccgctgctcgacgaatccggctcgacccttcag
tcacgccaggtgcgaaagcgcgatcccgcccagccaagcctgcccttcgatccgatgccc
gagcgcatcgagccgtgcctggcgcttttgaagccgacaccaccgaagggagccgactgg
ctgttcgaggtgaaatgggacggctaccgtctggcgctccacatccatcggaaggatgtg
aaggtcatcactcgcggaggccacgactggacgcaccgctttccggcaattgtcgatgcg
gcgcgtgcactcggggtcaacagcgccattctcgacggcgaagccgtcgtgcttgacaat
caaggccgctccgacttcggggcattgcagcgctcgcttggtggccgcggcggcaaaaag
gcgtcagacgaagcgatcctatatgcgttcgaccttctctatcttgacggccacgacttg
actggcaccgagctttcggtgcggcggcatctgctggaggatctcatttcaccgacgagc
gacggcgccgttcgcctgtcgcaggagatggccttggacggcgaggtcctgctggagcac
gcatgccgggcagggcttgagggcattatcgccaagcaccgcgaccggccatatcgctcc
gggcgcaccggcgattggcagaagatcaagtgcatccaaagcgagagcttcatggtcgtc
ggctatgaacagtcgtcctcggcacgcggcggcatcggtagcctgctgctcgccgcgcgg
aaaggttatgattgggcctatgtcggctcggtcggaaccggcttcaacacgaaagatgcc
gaatacctgcgcaagaccctcgataagctgaagacagccaggccggtcgtgccgctgaag
ggcaagaatctcgtctttgctcagccgacaattattgccgaaatcgagttccgcggctgg
acacatgacggcagccttcgtcacgcctcctacaagggtctaagggaaatccaggacaac
gccgcagtcttcgacattgccgagcggcctgcgccaagcgaatag
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