Rufibacter sp. DG15C: TH61_08815
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Entry
TH61_08815 CDS
T04326
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rud
Rufibacter sp. DG15C
Pathway
rud03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TH61_08815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rud03400
]
TH61_08815
Enzymes [BR:
rud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TH61_08815
DNA repair and recombination proteins [BR:
rud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TH61_08815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMM51254
UniProt:
A0A127B1Z2
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All DBs
Position
complement(2082275..2085631)
Genome browser
AA seq
1118 aa
AA seq
DB search
MKATQFLELYRQDPVVQTVAQRLSVAEPTHVQLKGLVGSLDAVVASTLQTMQPRTHLFIL
HDREEAAYFYSDLSSLLEDTQEVLLFPSSYKRAYQFDSTENANILLRAEVLNRLNDRAGA
GALIVTYPEALTEKVINKKSLVANTLGAKVGEKLDVNFLTEVLNSYDFERTDFVYEAGQF
AVRGGIIDVYSYANELPYRLELFGDEIESIRTFDPNTQLSVEQKKQISIIPNVQTKLLQE
TRESFLDFIPEDSKIWVKDYRQTVEVVSESYEKAEQAFQEMLEHSAGVQIVSKPADLFES
GKAFKKGLEKFTLVEFGKRFNFKNAEVVQFQAHPQPSFNKDFQRLAANLHENQSNGYVNV
IASESPRQADRLLTIFDELDHDVRFHHMMLALREGFVDDQVKLVAYTDHQLFERYYKHKT
KEGYSKSKALTLKELKTLKSGDYVTHMDYGIGRFAGLDKVEVGGRLQEAIRLVYRDDDLL
YVSIHSLHKITKYTGKEGTPPSMSKLGSPEWENKKKKVKSKVKDIAAELIRLYAKRKAAP
GYAFSRDGFLQAELESSFIYEDTPDQGKATEDVKNDMEQPHPMDRLVCGDVGFGKTEIAI
RAAFKAACDGKQVAVLVPTTILAMQHYKTFRDRLEAFPVNVEYINRFKTTKQIKETLARV
AEGKTEILIGTHRLASKDVKFKNLGLLIIDEEQKFGVKTKDRLKEIKINVDTLTLTATPI
PRTLHFSLMGARDLSVIATPPPNRQPVQTELHVFEDTLIRDAVAAELKRKGQVFFVHNRI
ADIEEMANLILKLVPDVKVTYAHGQMDPEELEKRMMRFVEGEYDVLVSTNIIESGLDIPN
ANTIIINRAHMFGLSDLHQMRGRVGRSNKKAYCYLLTPPVSGLPSDARKRLSTLEEFSDL
GEGFKIAMRDLDIRGAGNMLGGEQSGFITDLGFEAYHQILDEAVQELKETEFKELFFKDV
DLDKLIEPIRECSIETDLEILIPDYYISNISERLQMYSKLDSVKDMESLNKLVAGMVDRF
GPMPEQVEQLVTIVKMRWEACHLGFEKLTIKKETLKGYIPSQNNDPFFQSETFSRILQYV
QQHSRRSRLKEAKDKLIVIVENVSTLATAQAIFEELKA
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagcaactcaatttttagagctataccgccaggaccccgtcgtgcagaccgtggcc
cagcgtttgtctgtggcagagcctacccatgtgcagttgaaaggtctggtaggcagtttg
gatgccgtagtggcttctaccctgcaaaccatgcagccgcgcacccacctgttcatcctg
catgaccgcgaagaggccgcttatttttacagtgacctttctagcctcttagaagacacc
caagaggtattgctgttccccagctcatataagcgggcttaccagtttgacagcaccgag
aatgccaacattttattaagagccgaggtccttaaccgcctcaacgaccgcgccggggcc
ggggctttgattgtgacgtatccagaggccctcacggagaaggtcatcaataagaaatcc
ctggtggcaaacacgctgggcgccaaggtaggcgaaaagctggacgtcaatttcctcact
gaggtcctgaacagctatgactttgagcgcaccgattttgtgtatgaggccggccagttt
gccgtgcgcggcggcatcatagacgtctactcgtatgccaacgagttaccctaccgcttg
gagttatttggcgatgagattgaatccatcaggacctttgaccccaacacccagctttct
gtagagcagaagaagcagattagcatcatccccaacgtgcagaccaaactgctgcaagag
acccgcgagtcgttcttggacttcatccccgaagacagcaaaatctgggtgaaggactac
cgccaaaccgtggaggtggtaagcgagtcttatgagaaagctgagcaggcgttccaggag
atgctggagcacagcgccggcgtgcagatagtctccaaacccgcagacctgtttgaaagc
ggaaaagcgtttaagaaaggcctggagaaattcactttagtggagtttggcaagcgcttc
aactttaagaacgccgaagtggtccagtttcaagcgcacccacagccttcctttaacaag
gattttcagcgcttggcggccaacctgcatgagaaccagagcaacggctacgtgaacgtc
atcgcctctgagtcgccgcgccaggcagaccgcttgctcaccatttttgacgaactggac
catgacgtgcggttccaccacatgatgctggccctgcgcgaaggcttcgtagacgaccaa
gtaaaattggtcgcctacacagaccaccaactgtttgagcgctattacaagcacaaaacc
aaagaaggctattccaagtcaaaagcgcttacgcttaaagaactcaaaaccttaaagtcg
ggggactatgtcacgcacatggactacggcatcgggcggtttgccgggttggacaaggtt
gaagtaggcggcaggctgcaggaagccattaggttggtctatagagatgatgatttgctg
tacgtgagtattcactcgctgcacaaaatcactaaatacaccggcaaggaaggtacgccg
cctagcatgagcaagctgggctccccagaatgggagaacaagaaaaagaaggtcaagagc
aaggtcaaagacattgccgccgagctcatcaggctttacgccaagcgcaaggccgctccc
ggctatgcgttctcaagagacggcttcttgcaggcagaattggagtcttcctttatctat
gaagatactccagaccagggcaaagccactgaagacgtgaaaaacgacatggagcaaccg
caccccatggatagactggtgtgcggggacgtgggtttcgggaagaccgagattgccatc
cgcgcggccttcaaagcggcctgtgacggcaagcaggtggccgttttggtgcctaccacc
atcctagccatgcaacattataagacgttccgggaccgcctggaggcttttccggtgaat
gtggagtatatcaatcgctttaagaccaccaagcagattaaggaaaccctggcccgcgtg
gccgaaggcaagaccgaaatcctgattggcacgcaccgactagccagcaaggacgtcaag
ttcaagaacttgggcttgctgatcattgacgaggagcagaagtttggggtaaaaaccaag
gaccgcctcaaagagataaaaatcaatgtggacacgcttacgctcacggccacgccaatt
ccgcgtacgctgcacttctctttgatgggtgcccgcgacctaagcgtaattgccacgccg
ccacctaaccgccaaccggtccagacagaattgcacgtctttgaagacaccctcatcaga
gacgccgtcgccgctgagctgaagcgcaaaggccaggtcttctttgtgcacaaccgcata
gcggacattgaggagatggccaacctgattctgaaactggtaccagacgtcaaggtgacc
tacgcccatggccagatggacccagaggagttagagaaacgcatgatgcgattcgtggag
ggcgagtatgacgtgctggtgtctactaacatcattgaaagcgggctggacatacctaac
gccaacaccatcatcatcaaccgtgcgcacatgtttggcctgagtgatttgcaccagatg
cgtgggcgcgtgggtcgttccaataaaaaagcctactgctacctgctaacgccaccggtg
tcgggtctgccatcagacgctcgcaagcgtttgagtaccctggaggaattctcagatttg
ggcgaaggtttcaagattgctatgcgcgatctggacatacgcggcgcgggaaacatgctg
ggcggtgagcagagcggtttcattacagaccttgggtttgaggcttaccatcagattctg
gatgaggcggtgcaagagttgaaggagaccgagttcaaggagctcttcttcaaagacgtg
gacctggataaactcattgaacccatccgggaatgttctattgaaacggacctggagatt
ctcatcccagactactacatcagcaacatctctgagcgtctgcagatgtacagtaagctg
gacagcgtcaaagacatggaaagcctcaataaattggtggcgggaatggtggatcggttc
gggcccatgccagagcaagtagagcaactggtgaccatcgtgaaaatgcgctgggaggcc
tgtcaccttggttttgagaaactcaccatcaagaaagagacgctcaagggctacattcct
agccagaacaatgatcctttcttccaatctgaaacctttagtcgcattttacagtacgtg
cagcagcactcgcgccggtccaggttaaaagaagccaaggacaagttgattgtaattgta
gaaaatgtctctacattggcaacggcgcaagccatttttgaagaactgaaagcatag
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