Salicibibacter kimchii: DT065_17620
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Entry
DT065_17620 CDS
T05571
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rue
Salicibibacter kimchii
Pathway
rue03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DT065_17620 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rue03400
]
DT065_17620 (ligD)
Enzymes [BR:
rue01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DT065_17620 (ligD)
DNA repair and recombination proteins [BR:
rue03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DT065_17620 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AXF57626
UniProt:
A0A345C345
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All DBs
Position
complement(3464913..3466709)
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AA seq
598 aa
AA seq
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MSFMLAFSREELPEGKQWHYELKYDGYRAQLVWDGSTCSLFSRNHNHLEKQFPEIMDTCC
RHFPKKTVHLDGEIVLLQNPGLADFHALKRRHRLRSQTSIHAESYKRPACFLVFDILVSD
DRDMKNESYLKRKQELKRIIGNFDLPTNPTPQDTRRIQSIPTYKDAETIRDQAKLYRSEG
IVAKTSAHSYTEKRSEAWLKIKTPYVLTCFILSYTPANGYFEVGVFKEGEAVTLGQCAHG
FSKTEKETLATIIKNNGSWNTSRRLYDIEPSIVVTLTFTTYSQDFREPRFQSFALDTPAD
QCTWETWENAMLKWPKRVTLTHPDKPLWKDPKILKREFLGFTRAVAPYALPHLAKRLLTV
VRYPHGKYGEAFFQKQCPEYAPAYVETEAFEDTDYVVSNHVDTLLWLANQLAIEWHIPFS
LSSSRYVEEIVLDLDPPDTEAFSLAIEGANVLKKIFDQLGLTSFVKFSGNKGLQVYLPLL
KNRYTYEDTHPFTEAIGAYCLQQRPDLFTRERLKKKRGRKLYIDIPQHAFGKTIIAPYSL
RGNEEALVACPLFWEEVSSSLHRTAFTLHGVQQRLQEEGCPFDPFMDTQNQLPNFRPH
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcatgttagcgttcagccgggaagaacttcccgaaggaaagcaatggcattat
gaattaaaatacgacggctaccgtgcacagctggtttgggatggctcgacatgctccttg
ttcagccgcaaccacaatcatttggaaaaacaatttcccgaaataatggacacttgctgc
cggcatttcccaaagaaaaccgtgcatctcgacggggaaatcgttcttttgcaaaacccg
gggcttgcagattttcatgcccttaaacgtcggcatcgccttcgttcacaaacttccatt
catgccgaaagctacaagcgtcctgcatgcttcctcgtcttcgatatcctcgtatccgat
gatcgcgacatgaaaaatgagtcttatctaaaaagaaaacaagaacttaaacgtataatc
ggaaattttgacctacccacaaacccgacgccacaggatacacgccgcattcaatcgatc
cctacatataaagatgctgaaacgattcgagatcaagccaagctttatcgcagcgagggg
atcgttgccaaaacttccgcgcattcttatacggaaaaacgctcggaagcctggttaaaa
attaaaaccccttacgtgcttacctgcttcattctttcttatacgcctgcaaatggttat
tttgaagtgggggtttttaaagagggagaggctgtcacgcttgggcaatgcgcacacggg
ttttcgaaaacggaaaaagaaacgttggccaccatcataaaaaataacggttcgtggaat
acgagccgccgattgtatgacattgaaccctccattgtcgtgacgctcacgtttacgacc
tacagccaagattttcgcgagcctcgttttcaatcttttgcgctcgacactcccgccgac
cagtgtacttgggaaacgtgggaaaatgccatgctgaaatggccgaagcgggtaacgtta
acacatccggacaaaccattatggaaggatcccaaaattctcaagcgcgagtttcttggc
tttactcgagcggtcgccccttatgcccttcctcatctcgccaagcgtttactgacggtt
gttcgctatccgcacggcaaatatggcgaagcatttttccaaaaacaatgcccggaatat
gcccctgcctatgtcgaaaccgaagcctttgaagataccgattatgtcgtttctaatcac
gtggataccttgctgtggcttgccaaccaactcgctattgaatggcacattccgttttcg
ctgtcttcaagccgttacgtagaggaaattgttcttgaccttgatccgcccgatacagaa
gctttttccttggcgatcgaaggcgcgaatgttttaaaaaaaatattcgatcaactagga
ttaacaagctttgtgaaattttccggaaataaagggttgcaagtgtatctcccccttctc
aaaaaccgatacacatacgaggacacgcatccgtttacggaagcgatcggtgcttactgc
ctgcaacaaagaccagatttattcaccagggaacgtctcaaaaaaaaacggggcagaaag
ctgtatatcgatattccccagcacgcttttggcaagaccatcattgctccatattcgctt
cgaggaaacgaggaagcgctcgtcgcctgtcctttgttctgggaagaagtatcctcaagc
cttcatcggacagcgttcactcttcacggcgtccaacaacggctacaggaggaaggttgc
cccttcgatccctttatggacacgcaaaatcagctccctaatttcaggccccattga
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integrated database retrieval system
