Rufibacter radiotolerans: TH63_03090
Help
Entry
TH63_03090 CDS
T03996
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ruf
Rufibacter radiotolerans
Brite
KEGG Orthology (KO) [BR:
ruf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TH63_03090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ruf03400
]
TH63_03090
Enzymes [BR:
ruf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TH63_03090
DNA repair and recombination proteins [BR:
ruf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TH63_03090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AKQ44835
UniProt:
A0A0H4VGU1
LinkDB
All DBs
Position
724570..727143
Genome browser
AA seq
857 aa
AA seq
DB search
MSLKEYNQKRHFNQTPEPEGKGAKNKGDLKFVVQRHQASTLHYDFRLELDGVLKSWAVPK
GPSLNPADKRLAMEVEDHPFSYRTFEGDIPEGNYGAGHVDIWDEGTFHAVDNPSRAEGEK
LMLQELEAGSLHFVLEGKKLKGEFALVKMKGRQKNAWLLLKKQDEFATDAYDAEDFARGG
GAVKPGKVPAKKASTAKEKASPAKAQTGKGKKGEMPHDIVPMTAKLTDGPFDDENWLFEM
KWDGYRAVAEVDNGQVRLYSRNGKSFKQKYAPVVQVLEGLKHQAIFDGELVVLGANGRAD
FQALQNYQNTPSEHLYYYIFDLLYLNGQDLTKVPLLRRKELLAEVLKGAKEPLRYSEHRV
GKGIAFFKEAQQHHWEGIMAKAADSKYHIGKRSQEWLKIKTHLRQEAVIAGFTEPKGSRI
HIGALVLGVYEGKELKYVGQSGSGFNKESLEDLKARLAPLVQEKSPFKVKVGLSRDVTWV
KPELVCELSFAEWTTDGQMRQAIFEGLRVDKKAKDVVHEHAIATPPEADAKEESSKGAKK
TKTMSKQEEEKEGLVLHLDGKDVAISSPDKLYWPEEGITKKDLVEYYQSMAEVLLPYLKD
RPESLLRHPNGITKPGFFQKDAGDHAPDWVQKESIRAESTGQDVNYVVCQDKATLAYLNN
LGCIQLNPWNSRLQHLEHPDYLVLDLDPGENTYDEVVETALVAKQVLDELEIPVYAKTSG
ATGMHLYVPLAAKFPFEQVKELAYALAQRVHARLPKLTSLERSPKERRNQIYIDFLQNAI
AQTIAAPYCVRPKAGATVSTPLQWKEVKTGLHPSQFTIKNVPQRVKKLGDIFMPVLGEGI
DVATYLKRLKQEDHGKK
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgagcttaaaagaatataaccagaaacggcacttcaaccagactcctgagcccgaaggc
aaaggggcaaaaaacaaaggcgacctcaaatttgtggtacagcggcaccaggcttctacg
ctacattatgatttccggctggagctggacggcgtgcttaagagctgggctgtgcccaaa
ggcccctcgcttaaccccgcagacaaacggctggccatggaagtggaagaccaccccttc
agttaccgcacatttgagggagacatccccgaagggaactatggcgccggccacgtggac
atctgggacgaaggcaccttccatgccgtagacaacccttcccgcgcggaaggtgaaaaa
ttaatgctacaggagctagaggccgggagcctgcactttgtgctggaaggcaagaagctg
aaaggcgagttcgcgctggtgaaaatgaaaggccgccagaaaaacgcctggctgctcctc
aaaaagcaggacgaatttgccacggatgcctatgacgccgaggatttcgccaggggcgga
ggggctgtaaaacccggaaaagtgccggcaaaaaaagcgtctacggctaaagaaaaagct
tctccagccaaagcccagacaggcaaaggtaaaaaaggcgagatgccccatgacattgtg
cccatgaccgccaaactcaccgacggcccttttgatgacgagaactggctgtttgagatg
aaatgggatggttaccgggcagtggcagaggtagacaacgggcaggtgagactctattcc
cgcaatggcaagtcctttaagcagaagtacgcccccgtggtccaggtactggaagggctt
aagcaccaggccatttttgacggcgaactggtggtgctgggcgccaatggccgcgccgat
tttcaggctttgcagaattatcagaatactccctcagagcacctgtattactacattttt
gatttgctgtacctcaacgggcaagaccttaccaaagtaccgctgttacggcgcaaggag
ttgttggcagaggttctcaagggggccaaagagcctttgcgctatagtgagcatagggta
ggcaagggtatagctttcttcaaagaggcccagcagcaccattgggaaggcattatggcc
aaagcggcagacagcaaataccatataggtaagcggtctcaggagtggctgaagatcaaa
acccacctgcgccaggaggctgtgatagccggtttcaccgagcccaagggcagccgcatc
catattggggcgctggttctgggcgtatatgagggcaaggaattgaaatacgtgggccag
agcggcagcgggttcaacaaagaaagcctggaagacctgaaggccagactagcaccgctg
gtgcaggaaaaatcgccgttcaaagtcaaggtaggcctttcccgtgacgtgacctgggtg
aaacccgaactggtctgcgaactctccttcgcggaatggaccacggacggacagatgcgc
caagccatttttgagggcctgcgggtagataagaaagccaaagatgtggtgcatgagcac
gccattgccactcccccggaggcagatgcaaaagaggaatcctcaaaaggggctaaaaaa
accaaaacaatgtcaaaacaggaagaagagaaagaaggcctggtactgcacctggacggg
aaagacgttgccatcagcagccccgataaactgtattggcccgaggaaggcattaccaaa
aaggatttggtagagtattaccagtccatggccgaggtactgctgccttacctgaaagac
cgccccgaaagtctgctgcgccaccccaacggcatcaccaaaccgggcttcttccagaaa
gacgccggtgaccacgccccagattgggtacagaaagaaagcattagggcagagtctacg
ggccaggatgtcaattatgtggtttgtcaggataaggccacgctggcgtacctcaacaac
ctgggctgtattcagctcaacccctggaactcgcgcctgcaacaccttgagcacccagat
tatttggtgctggacctggaccccggcgagaatacttatgatgaggtggtggaaactgcc
ctggtagccaagcaggtgctggatgaactggagataccggtgtatgccaaaacctcaggt
gccacgggcatgcacctgtacgtgccgctggctgccaaattcccgtttgagcaggtcaag
gaactggcctatgccctagcgcaacgggtgcacgcccgcctgccaaagcttaccagcctg
gagcgcagccccaaagagcgtcgcaaccagatttacattgattttctgcagaacgccatt
gcccagaccattgcggccccttactgcgtccggcccaaggccggggctaccgtctccacg
cccctgcaatggaaagaagtgaaaaccggattgcacccttcgcagtttactataaagaac
gtgccccaacgcgtcaaaaagctaggcgatattttcatgcccgtgctgggcgaaggcatt
gatgtggccacgtacctgaaaagactgaaacaagaagaccatggaaaaaaataa
DBGET
integrated database retrieval system