Ruficoccus sp. ZRK36: K0V07_10510
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Entry
K0V07_10510 CDS
T07427
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rufi
Ruficoccus sp. ZRK36
Pathway
rufi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rufi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K0V07_10510 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rufi03400
]
K0V07_10510 (mfd)
Enzymes [BR:
rufi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K0V07_10510 (mfd)
DNA repair and recombination proteins [BR:
rufi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K0V07_10510 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
ResIII
CarD_TRCF_RID
RecG_dom3_C
UB2H
AAA_22
Ribosomal_L10
Sua5_yciO_yrdC
Motif
Other DBs
NCBI-ProteinID:
QYY34733
LinkDB
All DBs
Position
complement(2384287..2387664)
Genome browser
AA seq
1125 aa
AA seq
DB search
MKPVCLPESFHSLLITGAADAAVPALTEELLCEEPAPATVLLAHDWKSLESWTDALELFA
GWSGRPLPRIERLPDLGSLEDDDPRAFELRCDTIAALTALREANALSPVVLAGTPASLLQ
SCPDPKTMSRGQLKLKPGQRTSLTALSERLATELGYDAEAVCETPGQYAVRGGLIDVYPL
NASAPLRIDFFGDEIESIRTYDPTTQRSEDTVDQLIIASAQAGLEGKRKATVLDYLPDNV
RWVLRQPDKLESSFTDLFQIPENIAAPARNFQTVINRRTDKPDHWVGLTDVESAQRLFPE
QTQSRTVVTESLENYRTFADTDKLGIVRVAAGNESREKFLKQLATWQADGHQLHFVCRTE
GEETRLREILGEIPGAKTLKADFLRGNLPEGFRLDDGAQKVVYATESEVAGRQRLYVSRR
RRKLPERQQVDQMLDFSELANGDYLVHLQHGVCIFRGLQRLDTGKKQEEVISLEFDEGIT
LHVRLHESHLLSRYVGLSKRAPKLGRLGSNAWDKTRRAAERATLDLAAQLLSLQAERNAR
PGYAFSSDQPWQHSFEDAFPFRETPDQLTAIDQTKADMEKPQPMDRLICGDVGFGKTEVA
LRAAMKAVLDGKQVAVMLPTTVLCQQMFNNFKERFADYPITVEMLSGFRTARQQTEVRRQ
LKQGDIDIVVGTHSLIGKAVKFRDLGLLIIDEEHRFGVRQKEKLKIMRHDIDVLSMSATP
IPRTLYFALVGAREMSVIETPPRDRLPIQTIVKAYEPKLIKEAVEFEIKRGGQVFYLHNR
VQTIEAVSLRLQEMVPDLRVAVGHGQMEPGELEEIMTRFVAGEFDVLVCTTIIESGLDIP
NCNTIIIEGADRFGLSQLYQLRGRVGRFNRQAFAYLLLHRHTRLLDVARKRLGAIRQFNQ
LGAGFRIAMRDLELRGAGNILGAQQSGHIAGVGFDLYCQLLRQSVARLKGDSTAALIRAN
VRLDFVLVGEYREGEEPLQETPDRFHALKADELSDKRGETVEAFIPVAYIGEARLRIDFY
RRLALASNLEQITEAAAEMKDRFGPWPEAVKCLIKMTEIRALAERNGISLVETEGNRLKC
RLANAREGSYLQIGNRFPRLTAKKPLAKLNEIQTFLKTTQNRTPA
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgaagccggtatgtctgcctgagtcttttcattccctgctgattaccggcgcggccgat
gccgccgtacccgccctgaccgaggagctcctctgcgaggagccagctccggctaccgtt
ctgctggctcacgactggaagtccctcgaatcctggacggacgctctggagctctttgcc
gggtggagtggccgcccgctcccccgtatcgagcgcctgcccgatctgggcagcctggag
gacgacgatccgcgcgccttcgagctgcgctgcgacaccatcgccgccctcaccgccctg
cgggaggcaaatgccctctcaccggtcgtccttgcagggacaccggccagcctgcttcag
tcctgccccgaccccaagaccatgagccggggccagcttaagctcaagcccggccagcgt
acctccctcaccgccctctccgagcgactcgccaccgagctcggctacgacgccgaggcg
gtctgcgaaacccccgggcagtacgccgtccgcggcggcctgatcgatgtttacccgcta
aacgcctcagccccgctgcgcatcgacttcttcggcgacgaaatcgagtccatccgcacc
tacgatccgaccacgcagcgttccgaggacactgtcgatcagctcataatcgcctccgcc
caagccgggctggagggcaagcgcaaggccactgtcctagactatctcccggacaatgtc
cgctgggtccttcgccagcccgacaagctcgagtcgtcctttaccgaccttttccagatc
ccggaaaacatcgccgcccctgcgcggaacttccagacggtgatcaatcgccgcaccgac
aagcccgaccactgggtcggcctgaccgatgtcgagagcgcgcagcgcctcttcccggag
cagacacagagccgcaccgtggtcacggagtcactggagaactaccgcacctttgccgac
accgacaagctcgggatcgtccgcgtcgccgccgggaacgagtcccgcgagaaattcctg
aagcagctcgccacctggcaggctgacgggcaccagctccacttcgtctgccgcaccgag
ggcgaggagacgcgcctgcgcgaaattcttggcgagatccccggcgccaaaacgctcaag
gcagacttcctgcgcggtaacctgcccgagggcttccgactcgacgacggggcgcaaaag
gtcgtctacgccaccgagtccgaggtcgcaggccgccagcggctctacgtcagccggcgc
cgccgtaagctccccgagcgccagcaggtggaccagatgctcgacttttccgagctcgcc
aacggcgactacctcgtccacctccagcacggcgtctgcatctttcgcggcctccagcgt
ctcgacaccggcaagaagcaggaggaggtcatctcgctggagttcgacgagggcatcacc
ctgcacgtacgcctgcacgagagccacctgctcagccgctacgtcggcctgagcaagcgc
gcccccaagctcggccgtcttggcagtaacgcctgggacaaaacccgccgcgccgccgag
cgcgccaccctcgacctcgccgcccagcttctctccctccaggccgagcgaaacgcacgc
cccggctacgccttttcttccgaccagccctggcagcactcctttgaggatgccttcccc
ttccgcgagacaccggaccagctcaccgccatcgaccagaccaaggccgacatggaaaag
cctcagccgatggaccgcctcatctgcggcgacgtcggcttcgggaagaccgaggtcgcc
ctgcgcgccgccatgaaggccgtcctcgacggcaagcaggtcgccgtcatgctcccgacc
acggtcctgtgccagcagatgtttaacaactttaaggagcgcttcgccgactacccgatc
acggtggagatgctcagcggattccgcaccgcccggcagcagaccgaggtgcgccgccag
ctcaagcagggtgacatcgacatcgtggtcggcacccacagcctcatcggcaaggccgtt
aaattccgcgatctggggctgctcatcatcgacgaggagcaccgcttcggcgtgcgccag
aaggaaaagctcaagatcatgcggcacgacatcgacgtgctcagcatgagcgccaccccc
atcccgcgcaccctttactttgcgctggtcggcgcccgcgagatgagcgtgatcgagacg
cccccgcgcgaccgcctgcccatccagaccatcgtcaaggcctacgagcccaagctgatc
aaggaagcggtcgagttcgagatcaagcgcggtggccaggtcttttacctgcacaaccgt
gtccagaccatcgaggctgtctccctgcgcctacaggagatggtgcccgacctgcgcgtc
gccgtcggccatgggcagatggagcccggcgagctggaggagatcatgacgcgcttcgtg
gccggggagttcgacgtgctggtctgcacgacaatcatcgagtccggcctcgatatcccc
aactgcaacaccatcatcatcgagggcgcggaccgctttgggctgtcccagctttatcag
ctgcgtgggcgcgtcggacgcttcaaccgccaggccttcgcctacctgctgctgcaccgc
cacacccgcctgctcgacgtggcccgcaagcgcctcggagcgatccggcagtttaaccag
ctcggggccggattccgcatcgccatgcgcgacctggagctacgcggcgccggtaatatc
ctcggagcccaacagagcggccacatcgccggagtgggcttcgacctgtactgccagctg
ctgcgccagagcgtggcccgcctcaagggagacagcaccgcggccctcatccgcgccaac
gtccggctggacttcgtgctggtgggtgagtaccgcgagggcgaggagcccctgcaggag
actcccgaccgcttccacgccctcaaggccgatgagctctccgacaaacgcggcgaaacc
gtcgaggccttcatccccgtcgcctatatcggtgaagcccgtctgcgcatcgatttttac
cgccgtctggccctcgcctcaaacctggagcagatcaccgaggccgccgccgagatgaag
gaccgcttcggcccatggcccgaagccgtcaagtgcctcataaaaatgacggaaattcgc
gctctggctgaacgaaatggcatcagcctcgtcgaaacagaaggaaaccgcctaaaatgc
cgtctggccaacgcccgtgaggggtcttatctacagatcggtaaccggtttccccgcttg
accgcgaaaaaaccgctagctaagttgaacgaaattcagacttttctaaaaaccacccaa
aaccggacaccggcctga
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