Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I01099
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Entry
RBI_I01099 CDS
T03158
Symbol
uvrB
Name
(GenBank) UvrABC system protein B
KO
K03702
excinuclease ABC subunit B
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RBI_I01099 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rus03400
]
RBI_I01099 (uvrB)
DNA repair and recombination proteins [BR:
rus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBI_I01099 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RBI_I01099 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
Hikeshi-like_C
HEM4
AAA_22
UvrD-helicase
FlaG
Bradykinin
DUF87
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
CCO04813
UniProt:
W0U409
LinkDB
All DBs
Position
I:1239957..1241927
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AA seq
656 aa
AA seq
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MDKFQLVSDYKLSGDQPEAVDALVKGIESGMREQTLMGVTGSGKTFTMANVIARINRPTL
VLAHNKILAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSKDVYIEKDSSVNDEIDK
LRHSATSAIAERRDVIIVASVSCIYSLGDPEEYKSMVVSIRRGMEKSRDRLIADLVGIQY
ERNDINFVRNKFRVRGDVVEIFPANSTDTAIRVEFFGDEIDRITEINVVTGEVVCSLAHA
AIFPASHYIVSRDKMHDAIEEIKQELDERIKYFKDNDMLIEAQRIAQRTNYDIEMLEEIG
FCSGIENYSRVLARRPAGSTPFTLLDFLPEDFVLFVDESHVSLPQVRGMYAGDRARKQTL
VDYGFRLPSAMDNRPLTFDEFYSHINQAVFVSATPGPIEQERSQQIVEQVIRPTGLLDPE
IIVKPTEGQIEDLLSEINMRTAKNQRVLVTTLTKKMAEDLTNYLKSFDVKVRYMHHDIDT
IERMEIIRDLRLGEFDVLVGINLLREGLDLPEVTLVAILDADKEGFLRSESALIQTIGRA
ARNAEGKVIMYADTVTRSMEKAITETERRRAIQMKFNEEHGIVPKTIVKDIRDVIEISTK
EEVEYEARQKTKLSKQETAKLIEKLTKEMKEAAKLLEFEHAAFLRDKIAELKGEKK
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggataagtttcagcttgtttcagattataagctatcgggcgaccagcccgaagcggtg
gacgctctggtaaagggtatcgaaagcggcatgagagagcagacccttatgggcgttacc
ggttccggcaagacctttactatggcaaacgttattgctaggataaaccgtccaacgctc
gtgcttgcccataataagatacttgccgctcagctttgctctgagttcaaggagtttttt
ccgaacaatgccgtggaatatttcgtgtcttactatgactattatcagcctgaagcctat
gtgcctagcaaggacgtttatatcgaaaaggacagctccgttaatgacgagatagataag
ctcagacattccgctacctccgctattgctgaacgccgtgacgttattatcgttgccagc
gtttcttgtatttactccctcggcgaccctgaggagtataagtccatggtggtgtctata
cgtcgtggtatggagaaatcccgtgacaggcttatcgctgaccttgtgggtatccagtat
gagcgtaacgatataaatttcgtgagaaataagtttcgtgtcaggggagatgtggtggag
atattccctgcaaattctactgatacagctatcagagtggagttcttcggagatgagata
gaccgtatcactgaaataaacgtagtgactggcgaggtggtttgctcacttgcccacgct
gctattttccctgcttcccattatattgtcagccgtgataaaatgcacgacgctatcgaa
gagatcaagcaggagcttgacgagaggataaagtattttaaggataacgatatgcttatc
gaagctcagcgtatcgcacagcgcaccaactatgatattgagatgttggaggagataggc
ttttgcagcggtatcgagaactattcccgtgtgcttgcaagacgtcccgcaggctctacg
ccgttcactttgcttgactttttgcctgaggattttgtgcttttcgtggacgaatcacac
gtttctctgccgcaggtaagaggtatgtatgcaggcgacagggcaagaaaacagaccctt
gttgactacggtttcagactgccgtcagcaatggataacagaccgctgacctttgatgag
ttttattctcatattaatcaggcggtgttcgtgtccgctacccctggacctatcgagcag
gaaaggtcacagcagatagtggagcaggtaataagaccgaccggtctgcttgaccctgag
ataatcgtaaagcccactgagggtcagatagaggatttgctcagcgagataaatatgcgc
acagctaaaaatcagcgtgtgcttgttactactcttacaaagaaaatggctgaggatctc
acaaattatctcaagagctttgacgtcaaggtgagatatatgcaccacgatatcgacact
atcgagcgtatggaaataatccgtgacctgcgtctgggcgagttcgatgtgcttgtgggt
atcaaccttttgcgtgagggtcttgatctgcctgaggtaactcttgtggctatacttgat
gctgataaagagggcttcctgcgttctgaaagcgcacttatacagaccataggcagagcc
gcacgaaacgctgagggcaaggtaataatgtatgccgacacggtaacacgttcaatggaa
aaggctatcaccgaaacggagcgccgtcgtgcgatacagatgaagttcaacgaagagcac
ggcatagttccgaaaactatcgtcaaggatataagagatgtaatagagatatccaccaag
gaagaggtggaatacgaggcaaggcagaaaacaaagctttcaaagcaggaaactgcaaag
ctcatagaaaagctcaccaaggaaatgaaagaggcggcaaagctgcttgaatttgagcac
gccgcattcttgcgtgataaaattgcggagttaaagggtgagaagaaataa
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