Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I01159
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Entry
RBI_I01159 CDS
T03158
Name
(GenBank) helicase, RecD/TraA family protein
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RBI_I01159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rus03400
]
RBI_I01159
Enzymes [BR:
rus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RBI_I01159
DNA repair and recombination proteins [BR:
rus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RBI_I01159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_4
SH3_13
UvrD_C_2
Viral_helicase1
HHH_5
AAA_11
PIF1
AAA_22
Helicase_RecD
nSTAND3
T2SSE
HHH_2
UvrD-helicase
UvrD_C
DEAD
AAA_12
DNA_pol_lambd_f
AAA_28
NTPase_1
AAA
SRP54
ABC_tran
TrwB_AAD_bind
AAA_16
MeaB
SLFN-g3_helicase
DUF815
HHH
AAA_29
RecD_N
RsgA_GTPase
AAA_5
Motif
Other DBs
NCBI-ProteinID:
CCO04872
UniProt:
W0U503
LinkDB
All DBs
Position
I:1305533..1307779
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AA seq
748 aa
AA seq
DB search
MEDLKTLKGEVDSIIFKSEDTGFCVLMLNCDNDLITVVGEMGDVEEGEDLVVTGEFTSHQ
KFGEQFKVHIFERSLPTTSAAIQRYLASGAISGVGPVLAKKLVNKFGDDTLDIIENTPDR
LTEIDGITVKKAEKISQEFKTTFAARSLMSYLNKFEIETSYGIKAWKRWGNTAEQIIKSN
PYVLCIQGVDLSFSRADAVAAKSDIPADSECRIKAGITYILRQNADQGHTCLPLDSLVKT
AVSYLDVDDKLIKKVIEDETEEENLYYYDKHGRRFVMLADFYKAEDYIARRLAIMRQISY
DNKIDFSEVIDLEEENNGIQYEKIQREAINLALSKGFLVLTGGPGTGKTTTLNAIISLYQ
QQGLNVMICAPTGRAAKRLSDLTGFDAKTIHRLLEVKHTSGDTLAFIHDENNLLDCDALI
IDEMSMVDSCLFEAVLRAISVTCKLVLVGDSDQLPSVGAGNVLKDIIDSGVMSVVTLKEI
FRQAQESEIVMNAHKIVNGEHIDLASKDKDFFFMQRLEYGELQDLVVELCKTRLPKAYDY
SPIDDIQVLSPTRKGPAGTVELNKRLQQELNPPAAGKSEVKTPVYTFRKGDKVMQTKNDY
EILWKKYITEDKTESGAGIFNGDIGIIIAVNKILKTVTIDFEGRIAVYDKQMLDNLELAY
AITVHKSQGSEFDVVILTVFGGFDKLYYRNLLYTAVTRAKRMLIIVGSKKRVDFMIDNNK
RTLRYTALKNMLMELVEGDDSGQQTLDI
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggaagatttaaagaccctcaagggtgaggttgacagcataatatttaaaagtgaggac
acaggcttctgtgtgcttatgcttaactgtgacaatgaccttatcacagttgttggcgaa
atgggtgacgttgaggagggcgaagatctcgttgtaacaggggagttcacttcacatcag
aagttcggcgagcagttcaaggtgcatatctttgagcgttctttgcctactacctctgca
gcgattcagcgttatcttgcaagcggtgctatatcaggcgtagggcctgtacttgccaaa
aagcttgtgaacaagttcggggacgatacccttgacataatagaaaatactcccgacagg
ctcacggagatagacgggataacagtgaaaaaagcggaaaaaatatctcaggagttcaaa
accacttttgccgcaaggtctcttatgtcatatcttaacaaattcgagatagaaacttct
tatggcataaaggcgtggaagcgttggggcaacactgccgagcagattataaaatcaaac
ccttatgtgctttgtattcagggcgtcgatctgtcattttcccgtgcggacgcagttgcg
gcaaagtctgatatccctgctgacagcgagtgcaggataaaggcaggcattacatatatt
ctaagacaaaacgctgaccaaggtcatacctgcctgcctttagacagtcttgtgaaaaca
gcggtaagttatcttgatgttgatgataagcttataaaaaaagtaatcgaggatgaaact
gaggaggaaaacctctactattacgataagcatggcagacgttttgttatgcttgcagat
ttttacaaagctgaggactacatagcaaggcgacttgccataatgaggcagatctcttat
gacaataagatagatttttccgaagtaattgatcttgaagaggaaaataacggcatacaa
tatgaaaaaatacagcgtgaagccataaatcttgcactgtcaaagggttttcttgtgctg
acgggaggaccaggtacaggaaagaccacaacgctcaacgctataatttctctttatcag
cagcaagggcttaacgttatgatatgtgcaccaacaggcagagccgccaaaaggctttct
gaccttacgggatttgacgcaaaaactatccataggcttcttgaagtgaagcatacaagc
ggtgacacacttgcgtttatacatgatgaaaacaatcttctcgattgtgacgctttgata
atcgacgagatgtccatggtggattcctgcctttttgaagccgttttgagagccataagc
gttacctgcaagctcgttctggtgggggacagcgatcagcttccgtcagtaggtgcagga
aatgtgttaaaggatattattgacagcggagtaatgtctgttgtaacactaaaagagatc
ttcagacaagcacaggagtctgagattgttatgaacgcccataagatagtaaacggcgag
catatcgacctagccagcaaggacaaggatttcttttttatgcaacggcttgaatatgga
gaacttcaggatcttgtggtggagctttgcaaaacaaggctgccaaaagcctacgattac
tcgcctatagacgacattcaggtgctttcgcctacacgtaaaggtcctgcgggtactgtg
gagctaaacaagcgtctgcagcaggagcttaatcctcctgccgcaggaaaatcagaggtc
aagacccctgtttatactttcagaaaaggtgacaaggtcatgcagaccaagaatgattat
gaaattctttggaaaaagtatataaccgaggacaagaccgaaagtggcgcaggcattttt
aacggtgatataggcataataattgcagtgaacaagatacttaaaactgtgactatagat
tttgagggcagaatagctgtctatgacaagcaaatgctggataatctggaacttgcctat
gccataacagtgcataaaagccaaggttctgagtttgatgttgtcattctcactgtattc
ggtggatttgacaagctttattacagaaatttgctttatacggctgtgacaagagctaaa
agaatgcttataatagttggctcgaaaaagcgtgttgattttatgatagataataataaa
cgcactttgaggtatactgcgcttaaaaatatgctaatggagcttgtagagggtgatgac
agtggtcagcagacgcttgatatataa
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