Rhodomicrobium vannielii: Rvan_0633
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Entry
Rvan_0633 CDS
T01353
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rva
Rhodomicrobium vannielii
Pathway
rva03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Rvan_0633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rva03400
]
Rvan_0633
Enzymes [BR:
rva01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Rvan_0633
DNA repair and recombination proteins [BR:
rva03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Rvan_0633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADP69910
UniProt:
E3HZV9
LinkDB
All DBs
Position
709780..712692
Genome browser
AA seq
970 aa
AA seq
DB search
MPKGAASAPAKSKRGAPAVSAKGDLTRYRQKRDFAKTPEPSGTKQLAKAPELRFVIQKHA
ARRLHYDLRLELDGVYKSWAVTKGPSLDPAEKRLAVHVEDHPLDYGDFEGIIPPGEYGGG
TVMVWDRGTWEPEGDPAKGYAKGHLAFTAHGEKLKGRWHLIHIKPRPGEKDQQWLLFKSD
DEFARAAGDGDILEDAPDSVATGRSIDEIARDGEAVWSGKAGLVKGELSPAEGAEEWPAL
PKRKRRRTLADATGAAGAIRADRRASDEDAAKTTSRRIARRVAKAPVAQDADPVAAAPPP
AKSPARVAVATTAPAGAAKAVAGAKKAPFPGFVAPCLAQLCERAPDGDNWLHEIKFDGYR
VMALIENGRVRLMTRSGLDWTERFPAIAAAFAAFPAASAIVDGEAVVEDHTGVSSFSALQ
EALSTRKSKADIVFFAFDLLYFDGYDLRGASLESRKAALAPLVEAAAASALRYSDHVIGH
GPAMVENACRLGLEGIVSKRLDAPYRSGRHGAWLKTKCTNRQEFVVGGYAPSTAMHGAIG
SLALGAYDNGALLHVGRAGTGFTQATAKALFKQLQPLRRATSPFANALSSEEKRGLVHVE
PQLVAEVEFRGWTGDRHLRHAAFKGLREDKPATEVLFEMPRQQTAPDAAARERTTPARAR
ATPGKGGTVDFEGIRLTHPDRILWEGQGLTKLGLADYYAEVADHILPFITGRPLALVRCP
SGQGGDCFYQKRSFAGLTDAVEVVPIADKDGDTEALVIHDLRGLINLVQSNVLEIHPWGA
RIDDLERPDTLIFDLDPGDGVGFEAVMDGAREVRRRLGDLGIESWVKTTGGKGLHVVSPL
VPDLGWEELKAFAQGIAQTMERDAPQRFVSTMAKKARDGKIYVDYLRNGRGSTAIAPYST
RAREGAPVATPLGWDELGPALTPQRFTVETMGRRLAALKSDPWAGYFENPQRIESLGGRA
ARQPRRRPKS
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagggcgccgcctcagcaccggcaaaatcgaagcgcggcgcgccggccgtctct
gcgaaaggcgacctcacgcgctaccgtcagaagcgcgacttcgcgaaaacgcctgagcca
tccggcacgaagcaactggccaaggcccctgagctgcgcttcgtcatccagaagcacgcg
gcgcggcggctgcattacgacctgcgccttgaactcgatggcgtctacaaaagctgggcg
gtgacgaaagggccgagcctcgatcccgccgaaaagcggctcgccgtgcatgtcgaggac
cacccgctcgactatggcgatttcgagggcatcatcccgccgggcgagtatggcggcggc
acggtcatggtctgggatcgcggtacgtgggagccggaaggcgaccccgcgaagggctac
gcgaaagggcatctcgccttcacggcgcacggcgagaaactcaagggccgctggcacctc
attcacatcaagccgaggccgggcgagaaggaccagcagtggcttctgttcaagtcagac
gacgaatttgcgcgcgcggcgggcgatggcgacatcctcgaagacgcgccggattcggtc
gcgacaggacgcagcatcgatgaaatcgcgcgcgacggcgaagcggtgtggtcaggcaag
gcggggcttgtgaagggcgagctttcgcctgcggagggcgcggaggagtggccagcgttg
ccgaaacgcaagcggcgtcgcacgctggctgatgccacgggcgcggcgggggccatccgt
gccgaccgccgcgcgtcggatgaggatgcggcgaagaccacgtcgcggcgaattgcgcgc
cgcgttgccaaagcacccgtagcgcaggatgccgaccctgtcgcagccgcaccgccaccc
gcgaagtcgcccgcccgcgtcgcggtggcaaccacggcacccgccggcgccgcgaaagcc
gtcgcgggcgcgaagaaagcgcccttccccggctttgtcgcgccatgcctcgcgcaactt
tgcgagcgcgcgcccgacggcgacaactggctgcacgaaatcaagttcgacggctaccgg
gtcatggcgctgatcgagaacggacgcgtgcgcctcatgacgcgcagtggcctcgactgg
acggagcgtttccccgcaatcgccgccgcgttcgccgcctttcccgccgcgtctgccatc
gtggacggtgaggccgtggtcgaggatcacacgggcgtgtcgagcttctcggcgctgcaa
gaggcgttgtccacccgcaaaagcaaagccgatatcgtcttcttcgccttcgaccttctc
tatttcgacggttacgacctgagaggcgcgagcctcgaatcacgcaaggccgcgctcgcg
ccgctggttgaagccgccgcagcgtcggcacttcgatattccgaccacgtcatcggtcac
ggcccggccatggtcgaaaacgcctgccgcctcggcctcgaaggcatcgtgtccaagcgc
ctcgacgcgccttaccgctccggccggcacggggcatggctcaagacgaaatgcacgaac
cggcaggaattcgtcgttggagggtacgcaccatcgaccgcgatgcacggcgctatcggt
agcctcgcgctcggcgcttatgacaacggcgcgctgctgcatgtgggccgcgccgggacc
ggcttcacgcaggcgaccgcgaaggcgctgttcaagcagctccagccgttgcggcgcgca
acctcgcccttcgccaatgcgttgtcgtcagaagaaaagcgcgggcttgttcatgtcgag
ccgcagctcgtcgccgaggtcgagtttcgcggctggacaggcgaccggcatctacgtcac
gccgcattcaagggcttgcgcgaagacaagcctgcaacggaggttctgttcgaaatgccg
cgtcaacagacagcccccgacgccgccgcccgcgaacgcaccacgcccgcgcgcgctcgt
gctacgcccgggaagggcggcaccgtcgatttcgaaggcatccggctcactcatcccgac
cgtattctctgggaggggcaggggctgacgaagctcggcctcgcggattattacgcagag
gtcgccgaccacattctgccgttcatcaccggccgcccacttgcgctcgtccgctgcccg
agcggccaaggcggcgattgcttctatcagaagcgatccttcgcgggcctcaccgacgcg
gtggaggtggtcccgattgccgacaaggacggcgacacggaggcgctcgtcatccacgat
ctgcgcggccttatcaatcttgtgcaatcgaacgtgctcgaaatccatccctggggcgcg
cgcatcgacgaccttgagcggcccgacacgctgattttcgatctcgatccgggcgatggc
gttggcttcgaagcggtcatggatggcgcgcgcgaggttcggcggcggctcggcgatctc
ggcatcgagtcgtgggtgaagacgaccggcggcaaggggctgcatgtggtgtcgccgctg
gtgccggatctcggctgggaggagttgaaggccttcgcccagggtatcgcgcagacgatg
gagcgggatgcgccgcagcgcttcgtttcgaccatggcgaagaaagcgcgcgacgggaaa
atctatgtcgattacctgcgcaacgggcgcggctcgacggccatcgcaccctattccacg
cgagcgcgcgagggcgcgccggtggcaacgccgcttggttgggacgaactcggcccggct
ctgacgccgcaaaggttcacggtcgaaacgatgggtcggcggctcgcagcgttgaagtcc
gatccgtgggcgggttatttcgagaatccgcagcgcatcgaaagccttggcgggcgagcg
gcgaggcaaccgagacggcgaccgaagtcttag
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