Rahnella victoriana: J9880_15350
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Entry
J9880_15350 CDS
T07871
Symbol
ldtD
Name
(GenBank) L,D-transpeptidase
KO
K21470
L,D-transpeptidase YcbB
Organism
rvc
Rahnella victoriana
Brite
KEGG Orthology (KO) [BR:
rvc00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rvc01002
]
J9880_15350 (ldtD)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rvc01011
]
J9880_15350 (ldtD)
Peptidases and inhibitors [BR:
rvc01002
]
Cysteine peptidases
Family C82
J9880_15350 (ldtD)
Peptidoglycan biosynthesis and degradation proteins [BR:
rvc01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
J9880_15350 (ldtD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
UHM89683
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All DBs
Position
3333481..3335331
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AA seq
616 aa
AA seq
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MLMNQRSLRFLVASCLLASGLSPWFAAWATVPTMPLGKTTLSSVQSMSQLQAELLPRGIR
PLYLSSLSSLYAANHMQPMWNDRETVQIFQQQLAELAISGIQPQFTQWVKWLTDPEVKGM
ARDVVLSDAMLGYLQFTSSVEANGEKWLYSTTPYKMTTPSLTVMNQWQLAVRQGTTAHYL
STLAPQHPYYSKMHDALKTMLADNRPWPVMSGTASLRPDQISDDVPALREILTRTGMMVA
SPEENKSPKPTDETIAPNAPGSAANDDLSVDETADKAQQSTPAVSPSATSVQDVLPSVQN
AETPAPAPAVAVANNQYTPELVDAVKRFQKWQGLEDDGVIGARTRQWLNASPQLRATLLA
LNIQRLRILPGNVNTGIMVNIPNYQLTYYLNGNEVLSSRVIVGRPSRKTPLMSSALNNVV
VNPPWNVPTTLVREDIMPKAMNNPTYFQQHGYQVLSGWSNDAEVIDPSMIDWAMVSPSHF
PYRIRQAPGANNSLGRYKFNMPSSDAIYLHDTPNHNLFSKDIRALSSGCVRVNKASELAN
MLLQDAGWNDTRISSALQGGNTTYVAIRHHIPVKLFYLTAWVADDGKPQFRTDIYNYDAT
VRSGAQILPQAEILLQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgttgatgaatcaaaggtctctcaggtttttagtcgccagctgtctgctggcgagcggc
ctgtcgccatggtttgcagcctgggcgacggtacctacgatgccgctggggaaaaccacg
ctgtccagcgtgcagagcatgagtcagcttcaggcggaactgctgccgcgagggatccgg
ccgctgtatctgtcgtccctgtcatcgctttatgcggcgaaccatatgcaacctatgtgg
aatgatcgggaaaccgtgcagatattccagcaacagttagctgagctggcgatttcgggc
atccagcctcagttcacgcaatgggtgaaatggctgacagatccggaagtaaaaggcatg
gcgcgcgatgtggtgttgtcggatgcgatgctgggctatttgcagtttaccagcagcgtg
gaagccaatggcgagaaatggttatacagcacgacgccatacaaaatgaccacgccttca
ctgacggtgatgaatcagtggcagctggctgtgcgtcagggcaccaccgcacattattta
tcgacgctggcaccacaacatccttattacagcaaaatgcatgatgcgctgaaaaccatg
ctggcggataaccgtccgtggccggtcatgagcggaacggccagtttacgtccggaccaa
atcagcgatgatgtgcctgcgttacgggagattctcacccgcaccggcatgatggtcgcc
tcaccggaagagaacaaatcaccaaaaccgacggacgaaacgatcgcgccaaatgcgccg
ggtagtgccgccaatgacgatttatctgtcgatgaaacggcggataaagcccagcaatcc
acgccagccgtcagcccgtctgcgacctcggtgcaggacgtcctgccgtcggtacagaat
gctgaaacgcctgcgccagcccctgcggtggcagtggcgaataatcagtacacccctgaa
ttagtcgacgcagtaaaacgcttccagaaatggcaggggctggaggatgacggagttatc
ggcgcgcgtacgcgtcagtggctgaatgcgtctccgcaattgcgggccaccttgctggcg
ctgaatattcagcgtctgcgtattctgccgggcaatgtaaacaccggtatcatggtgaac
atcccgaactatcagctcacttattacctcaatggcaatgaagtgctgtcttcgcgtgtg
attgtcgggcgtccgagccgcaaaacgccgttaatgagcagtgcgctcaataacgtggtg
gtgaatccgccgtggaatgtgccgactacgctggtgcgtgaagatattatgccgaaggcc
atgaataatccgacgtacttccagcaacatggttatcaggtgttgtccggctggagcaat
gacgccgaagtgatcgacccgtcgatgattgactgggcgatggtttcaccgagccatttc
ccgtatcgcattcgtcaggcaccgggcgcgaataattccctcgggcgttataaattcaat
atgccaagttctgatgccatctacctgcatgacacgccgaaccataatcttttcagcaag
gatattcgcgcgctgagttcagggtgtgtgagggtaaataaagcatcggaattagccaat
atgctgttgcaggatgctggctggaatgacacccgtatttcgtctgccttacagggcggc
aataccacttatgtggcgatacgccatcatataccggtaaaactgttttatctgacagcg
tgggtggcggatgacggtaagccgcagttccgcacagatatttacaattatgatgcgaca
gtgagatcgggtgcacaaattttgcctcaggcagaaattttgctccaataa
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