Rhododendron vialii: 131303321
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Entry
131303321 CDS
T09330
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2-like isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
rvl
Rhododendron vialii
Pathway
rvl03022
Basal transcription factors
rvl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131303321
09124 Replication and repair
03420 Nucleotide excision repair
131303321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131303321
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131303321
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
131303321
DNA repair and recombination proteins [BR:
rvl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
131303321
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
MetRS-N
Motif
Other DBs
NCBI-GeneID:
131303321
NCBI-ProteinID:
XP_058186112
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Position
10a:complement(10090460..10100283)
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AA seq
449 aa
AA seq
DB search
MPQVKIIAKNFMDMVASLPAMKLDKLYDNAFICEAILRSLPPLAKKYVLQMLYIDEPVLA
TSIHEWVLADGESKHTVAVDRLVQLRVFIETVDRKKGTTYRLNTKFQINLQKHIVHGGVL
PREPMPSTITVRLPSLEDLEAYAAEQWECFLLHLISSGQTERTTNFSSSMMKIFQRGLLS
QRDKEAPKLTESGFQFLLMDTNAQLWYIIREYITNSEERGVDTADLISFLLELSFHVTGE
AYNMNTLTDIQRNVIKDLADLGLVKLQQGRKESWFIPTKLATNLSISLSDLSSRKQGFVV
VETNFRVYAYSSSKLLCEILRLFSRVEYQLPNLIVAAITKESLYNAFENGIMAEQIITFL
QQNAHPRVAERIPSVPENVTDQIRLWESDMNRVEMTPASLFDEFPSRDVFEAACDFAREY
GGVLWEDSKKMRLVVKAEILGQIREFLRR
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagtgaagattatagccaagaacttcatggacatggtggcctccttgcctgcc
atgaagctcgacaagctttacgacaatgctttcatttgcgaagccattctcagatctttg
ccaccgttggccaagaagtacgtcttgcagatgctgtacattgatgaaccagtattagca
acgtcgatacatgagtgggtgcttgcagatggagaatctaaacatactgttgctgttgat
agattggtccagttgagagtatttattgaaactgttgacaggaaaaaggggaccacttat
agattaaacacaaagtttcagattaaccttcagaagcatatagtacatggtggagtttta
ccaagggaaccaatgccttctactatcacagtgaggcttccaagcttggaggatctagaa
gcctatgctgctgaacaatgggagtgtttcttgctgcaccttatcagctccggccaaacg
gaaaggacaacaaacttcagctcttcaatgatgaaaatattccaacgaggccttctgagt
cagagagacaaagaagctccaaagctaactgaaagtggtttccaatttttgctgatggat
acaaatgcacaactctggtacatcatcagggaatatatcacaaattctgaggagcgaggt
gtggatacagcagatttgatttcatttctgctggagcttagttttcacgtcacgggtgag
gcatataatatgaacacattgactgatattcagagaaatgtgataaaagaccttgccgac
ctgggattggtcaagcttcagcagggtaggaaagagagttggtttattcctactaagtta
gctaccaatctgtcaattagcttatcagatttatcatcacggaagcagggttttgttgtt
gtggaaactaactttagggtgtatgcatactcttcatccaaattactttgcgagatcttg
cggctcttctcaagggtagaatatcaacttccaaatcttattgttgctgccatcacaaaa
gaaagcctgtataatgcttttgaaaatggcattatggcagagcagataattacttttctt
cagcagaatgcccatcctagagttgcagagagaataccctcggtaccagaaaatgtcacg
gatcagattaggttgtgggaatcagatatgaatagggttgagatgacacctgctagtctt
tttgatgagttcccttctcgggacgtttttgaggccgcttgtgactttgcacgagaatat
ggaggtgtattgtgggaagactcgaagaagatgcgcttggtggtgaaggcagaaatactt
gggcaaatacgagaatttttgcgtcggtag
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