Rhododendron vialii: 131307331
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Entry
131307331 CDS
T09330
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131307331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rvl03041
]
131307331
Spliceosome [BR:
rvl03041
]
Complex A
U1 snRNP components
U1 related factors
131307331
Complex B
131307331
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
Motif
Other DBs
NCBI-GeneID:
131307331
NCBI-ProteinID:
XP_058189769
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Position
11a:34506303..34524298
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AA seq
1015 aa
AA seq
DB search
MFVVFFRDFSCAAMANNAQFSGMQPLRPPIPPGPPQGAPPPMPMQFRTAVPAPQSQVYIP
MASQQFQHVGHTNIGMPFHSQQFQFSSVQQLPAIPAPEVQANRPPQNPQIAGTYGAGLNG
PRMLLSSTYTFGASPGGQLQRNADASVQYQLTPQTNASSFSGGAQPWLPTGPQSMISVVQ
NTGDQSSATPPVVPAATEEPNHIEKLPSDWLEHIRAGKRYYYNKKTKFSTWEKPLELMTS
IERADASTDWKEHTSPEGRKYYYNRVTKQSKWKIPDELKLAREKVKMASTGGTLAGNDDS
PAPVLNAVTPSSLAHGSVSSPIQVATVSAGVSPKPMATSGQSFSPVAPSMVEENAIQVQT
PAQTIPPNAAVSESTKTSHIMLDATVTQISSSSVDTKAAQDVVDTVDRVSTGDIEEAENG
KGSARNVNVSVSGEKTVVQEPVVYENKLEARNAFKALLESANIGSDWTWDQAMRVIINDQ
RYGALRTLGERKQAFNEFLVQRKKKDAEERRARQKKAQEDFRNMLEESKDLMPSSRWSKV
ITIFEDDERFKAVERAKDREDLFQDYMVELEKKERANALEELKWSRREFLNFLKSCDFIT
ASSQWRKVQDRLEADERCSRLEKVDRLEIFQEYIRDLEREEEEHMKIRMEELRKVERKNR
DEFRRLMEEHVVSGILTTSTHWRDYCMKVKDLAAYLAVSSNTSGSTAKDLFEDVAEELQK
QYLEDKARIKDAMKSRKIALSSTSTLEDFKAVLLEGISSQPSSEINLKLVFDELHERVKE
KEEKEAKKRKRLADDFYNLLCTSKDLTASSKWEDCKQIIEDRQESWFVGEDSFFRNIFDE
YITEMKEKEKEKERKRRDDKAKREKDAKDREKKEKHSREKRRRYASKYGKDRTHSEDAGK
YEPYVLEESKRSGKDKNRRHRERYLSHVDDLSVDENEKDRSENSHRHSSDRKKSKQMEQR
SPSEQDSEIRHKRHKQDHQDGSSRNDDYGELRDREFDCFPKLLSDFSDQKLLPLH
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtggttttcttcagagatttttcttgcgctgccatggccaataatgctcaattt
tctggaatgcagcctcttcggcctcctataccgccgggccctcctcaaggtgctcctcca
ccgatgccaatgcaatttcgaactgcggttccagcaccacaatcacaggtctatatccca
atggcttctcaacaatttcagcatgttggccacacaaacattggaatgccttttcacagt
cagcaattccagttttcctctgttcagcaactacctgcaataccggcccctgaagttcag
gcaaaccggcccccacaaaatcctcagattgccggtacttatggtgctgggttaaatggt
ccaagaatgcttctctcttcaacatatacgtttggtgcatcacctggtggccaattacaa
agaaatgctgatgcctcagtccagtatcagctgactccccagacaaatgcgtctagtttt
tctggtggggcccaaccttggctgccaactggacctcagagcatgatttctgttgtacag
aatactggtgatcaatcatcggctactcctccggttgttccagcagcaactgaggagcct
aaccacatagaaaagctaccatcagattggttggagcatattcgtgctggaaaaagatat
tattacaacaagaagacaaaattttcaacgtgggagaagcctctagaattaatgacatca
attgagagagcagatgcttccactgattggaaggagcatacaagtcccgagggaagaaaa
tattactacaacagggttaccaagcaatcaaagtggaaaatccccgatgaactcaagctg
gctcgtgaaaaagtgaaaatggcatctactggaggaactctggcaggaaatgatgatagt
cctgcaccagtcctcaatgcagttaccccatcttccttggcccatgggtcagtatccagc
cctattcaagtggcaacagtttctgctggtgttagcccaaagcctatggcaacttcaggg
caatcattctcacctgttgccccctctatggtggaagaaaatgcaattcaagtccagaca
cctgcacaaaccatcccaccaaatgctgctgtttcagagagtaccaaaacctctcacatt
atgctcgatgccactgtgacacaaattagcagtagtagtgttgatactaaagcagctcag
gatgttgtcgatacagttgacagagtttcaacaggggatattgaggaagctgaaaatggc
aagggaagtgctaggaatgtcaatgtttctgtatcgggagagaaaacagttgttcaggag
cctgtggtctacgaaaataaattggaggctaggaatgcatttaaagcacttctggaatct
gcaaacattgggtctgattggacatgggatcaggctatgcgagtaatcattaacgaccaa
aggtatggtgctttaagaactcttggagagcggaagcaagcttttaatgagttcctggtg
caaagaaaaaaaaaggatgccgaagagaggcgcgctagacagaaaaaagcacaggaagat
ttccggaacatgttggaagagtccaaagatctgatgccatcctcaagatggagcaaagta
atcactatttttgaagacgatgaacgtttcaaagctgtagaacgagctaaagaccgagag
gaccttttccaagactatatggtggaacttgagaaaaaggaaagggcaaatgcattggaa
gagctcaagtggagtagaagggaattcttgaacttcctgaagtcatgtgactttattacg
gcaagcagtcagtggagaaaagttcaagatcgcttagaggccgatgaaagatgctcacgt
cttgaaaaagttgatcgcttggaaattttccaggaatatattcgtgatctagagagagaa
gaggaagagcatatgaagattcggatggaagaattgagaaaagtggagcgcaaaaatcgt
gacgagttccgtagattgatggaagagcatgtcgtgtctggaatacttactacctcaact
cactggcgtgattactgtatgaaggtcaaagatttagctgcatatttggcagtctcatca
aacacctctggttcaacagcaaaagatttgtttgaagacgtggctgaggagctacagaaa
cagtatctggaagacaaggctcgcataaaagatgctatgaagtcacgaaagattgctctg
tcatcaacttcgacacttgaagacttcaaagctgtacttttagaaggaatttcctctcaa
ccatcatcagagatcaacttaaagcttgtatttgatgagctgcatgaaagagtgaaggag
aaggaggagaaagaagctaaaaagaggaaacgccttgcagacgacttttacaatctcttg
tgcacttccaaggatctaacggcatcttcaaaatgggaggattgcaagcagataattgaa
gatagacaagagagctggtttgttggggaagatagcttctttagaaacatctttgatgaa
tacataacagaaatgaaagaaaaagaaaaggagaaggaacggaagcgaagggatgataag
gccaaaagagagaaagatgcgaaggatagagagaagaaggaaaaacacagccgcgagaaa
cgacgacggtatgcaagcaaatacgggaaggatagaacacacagtgaagatgctggtaaa
tatgaaccttatgttttggaagagagcaaaagatctggaaaagataagaataggagacat
cgagagcggtatctaagtcatgtggatgatctgagtgtggatgaaaatgagaaagatcgg
tctgagaactcccacaggcacagcagtgacaggaaaaaatcaaagcagatggaacagcga
agcccttctgaacaagatagtgaaattaggcacaagagacacaagcaagatcaccaggat
ggttctagcaggaatgatgattatggcgagcttagagacagggaatttgattgctttccg
aaactccttagtgacttttccgatcaaaagctgcttcctttgcattga
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