Rhododendron vialii: 131320923
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Entry
131320923 CDS
T09330
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
131320923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131320923
Enzymes [BR:
rvl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
131320923
DNA repair and recombination proteins [BR:
rvl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
131320923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
131320923
NCBI-ProteinID:
XP_058207822
LinkDB
All DBs
Position
3a:35758981..35773691
Genome browser
AA seq
1155 aa
AA seq
DB search
MCDETKFSVMCSLFNWMQRSKSSAKKRSKFRKFLDNFCKPGDYFNAIRLILPSLDRERGS
YGLKESVLATCLVDAVGMSRDSQDALRLFNWRKGGAPKAGSNAGNFALVAAEVLQRRQGW
ASGGLNIKELNEMLDRLASSENRAEKTSVLSDLIKKTNAQEMKWIVMIILKDLKLGVSEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKPVRPQLAMRVGNANNAW
KKLHGKEVVAECKFDGDRIQIHKNGQEIHFFSRNFLDHPEYEHSMSAIIIQSIIADRCIL
DGEMLVWDTSMNRFAEFGSNQEIAKVAKEGLDSDRQLCYVAFDILYFGDTSVIHQSLKER
HELLRKVVKPVKGRLEVLVPNGGLNDRRPSGEPCWSLIANSVDDIERFFKETIENRDEGI
VVKDLGSKWEPSDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAER
SAPDMYPKRFISFCRVGTGLSDEELDAVVTKLKPYYRKNEYPKKASPSFYQVTNNSKERP
DVWIESPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFVELV
HSSNGTTQRDADYGVVQVDKPKRMKLSRKGEKKIVSVVPSHFVQTDISTIKGETLIFSSM
MLYFVNIGPTHSLDSLHKMVAENGGAFSMNLNSSVTHCIAAESKGMKFQAAKRHGDIIHY
SWLFDCCSQKKLLPLQPKYFLFLSDSSRKKLQEEIDGFSDPYYWDLDIKDIKQLLSNINR
SEDSKTVEHYKRKFCPKARWYCFHGCCIYFHTSVQALNSDTKLLTELALRRMKLEVSNGG
GQVSNSLSRATHLVVIAPLGLIVDFDEVLKSYSSEEARLLHRRSLHVVWSQWLEDCLDKE
EKVQEETYSLKPTGLEESNSGEWKDDLSLDELSNIGAVERPNTSSSPANDGGHSKGKAAL
DEPRLLTSPKNIGKRKRGRPLGTCVNKGQKGVLQPRRTQSRLGSKSAKIHEIEPDVTSSE
ENAVTEESEMELGIQESKHEVIVEDSDSPNRGKAVKPEEVGEDTILGEWFNNSHGIKSGS
GNSAQENEKLEVLVDPVQSMLLDMIPSLKTKKVESIDPVVEDKKPPEDTDDNAEPVKKKK
RVSYKDVAMELLRDL
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgacgaaaccaagttcagcgtcatgtgcagcctgttcaactggatgcagaggagc
aaatcgtcggccaagaagcgctccaagttccgaaagttcctcgacaacttctgcaaaccg
ggcgattacttcaacgccatcaggctcatcctcccctccctcgaccgcgagcgcggctcc
tacggcctcaaggagtccgtcctcgccacctgcctcgtcgacgccgtcggcatgtcccgg
gactcccaagacgccctacgcctcttcaattggcgcaagggcggcgcacccaaggccggc
tctaacgccggcaatttcgccctagttgctgccgaggtgctgcaaagaaggcagggttgg
gcttctggcggtctaaacattaaggaactaaatgagatgcttgatcgattggcttcaagt
gaaaacagggcggagaagacttctgttctttctgatctaatcaagaaaaccaatgcacaa
gaaatgaagtggattgtaatgataattctaaaagatctcaagttgggagttagcgagaag
agcatctttcatgaattccatccggatgctgaagatttgttcaacgttacgtgtgactta
aaactggtttgtgaaaagttacgggatcgaagtcaacggcacaaacgtcaggacatagaa
gttggaaagcctgtgcgtccccaactagctatgagggttggtaatgcaaacaatgcatgg
aagaagcttcacgggaaggaagttgttgcagagtgcaaatttgatggtgaccggattcaa
atccataaaaatggacaggagatacactttttctcaaggaactttcttgaccatcctgaa
tatgagcattcaatgtcagccatcatcatacaaagtattattgctgacaggtgtatactt
gatggcgagatgttggtttgggacacatctatgaaccgtttcgctgagttcggttctaat
caggaaatagcgaaggtagcaaaggaaggacttgatagtgaccgacagctgtgctatgtt
gcttttgacattctctatttcggagacaccagtgttattcatcaaagcttgaaagaacgc
catgaacttcttcgtaaagttgtaaagcctgtaaagggtcgattagaagttttggttccc
aatggtggtcttaatgatcgtcggccttctggggagccttgttggtcacttattgctaat
agcgtggatgatattgagaggttttttaaagaaactattgaaaacagagatgaaggtatt
gtggtaaaagaccttggttccaagtgggaaccaagtgaccgaagtggaaagtggttaaag
ttgaagcctgattacattcgagctggctctgatttagatgttcttataataggaggatac
tacggctccgggcgtcgtggaggagaggtggctcagtttttggtgggccttgcagagcgt
tccgccccagatatgtatcccaaaagattcatctctttttgcagagtgggcactggactt
tctgatgaagagcttgatgctgtagtaacaaaattaaagccatattacaggaaaaatgaa
tacccgaagaaggcttcgccaagcttttatcaggttacaaataactccaaagagagacct
gatgtttggattgaaagccctgaaaaatcaatcatactttctattaccagtgatattcga
accataaggtctgaggtatttgctgcgccatacagcttgaggttcccacgtattgacaga
gtcagatacgacaagccttggcatgaatgtcttgatgtgcaatcttttgtagaattggta
cattcaagcaatggtaccacacagagggatgcagattacggggtcgtgcaggttgacaaa
ccgaaacgcatgaaattgtcaagaaaaggggagaaaaagattgtttctgttgttccttct
cattttgttcagactgatatttccacaataaagggggagacgttgatattttcgagcatg
atgctttactttgtcaacattggtccaacacattccctggattccttgcacaaaatggtg
gctgagaatgggggagctttttccatgaatctgaatagctcagttactcactgtattgca
gccgaaagtaaaggtatgaaatttcaggcagcaaagcgtcatggtgatattattcattac
tcttggctctttgattgctgttcacagaagaagcttctccctttgcagccaaagtacttc
ctcttcctttcggattcttcaagaaaaaagttacaagaagaaattgatgggttctctgat
ccttactactgggatcttgacattaaagatatcaaacagctgttaagcaacataaatagg
tccgaagattccaaaaccgttgaacattataagaggaaattttgtccaaaggctagatgg
tattgttttcatggttgctgcatctacttccacacttcagtgcaggcgttgaattcggat
acaaaattgttgactgaacttgcattgagaaggatgaagcttgaagtgtccaatggtggt
ggccaagtcagcaatagtctttctcgggctacgcatttagttgtcatagcaccattggga
ttgattgtggattttgatgaagtgttgaaaagttattcatcagaggaagcacggctttta
cataggagaagcttgcatgttgtttggtctcaatggttagaagactgtttggataaggaa
gagaaagtgcaagaggagacatatagcttgaagcccactggcttggaagagtcgaactct
ggagagtggaaagatgaccttagtctagatgaattgtcaaatattggcgctgtagaacgg
ccgaatacatcatcttctcccgccaacgatggaggacatagcaaaggcaaagctgcttta
gatgaaccaagacttttgacctctcccaagaatattggaaaaaggaaaagaggaaggccc
cttggcacgtgtgtaaataaagggcaaaagggtgtccttcaacctcgcagaacacagtca
cgacttggaagcaagtctgctaaaatacatgaaattgaaccagatgtaacttcttccgag
gagaatgccgttacggaagagtctgaaatggaacttggaattcaggaaagtaaacatgaa
gtgatagtagaagattctgattcaccaaatagaggaaaggctgttaaaccagaagaggtt
ggagaagatacaatactaggagagtggttcaacaattctcatggaatcaaatcgggaagt
gggaatagtgcccaggaaaatgagaagctagaagtcctggtcgatcctgttcagtccatg
cttctagacatgattccgagccttaagacgaagaaagtagagagtatagatcctgttgta
gaagataagaagccacccgaggatactgatgataatgcagagccggtgaagaaaaagaag
agagtcagctataaggacgttgccatggagctgctcagggatttgtag
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integrated database retrieval system
