Rhododendron vialii: 131334797
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Entry
131334797 CDS
T09330
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
rvl
Rhododendron vialii
Pathway
rvl03013
Nucleocytoplasmic transport
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131334797
09122 Translation
03013 Nucleocytoplasmic transport
131334797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131334797
03041 Spliceosome [BR:
rvl03041
]
131334797
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
131334797
Spliceosome [BR:
rvl03041
]
Complex C
Other components
EJC/TREX
131334797
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
131334797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Herpes_UL92
Haemadin
Motif
Other DBs
NCBI-GeneID:
131334797
NCBI-ProteinID:
XP_058226036
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All DBs
Position
7a:8303133..8317773
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AA seq
602 aa
AA seq
DB search
MDILRRAILEPGPPENFALKTVQEVIKPQKQTKLVQDENQLLENILRTLLQELVSAAVQS
GEKIMEYGQSIVDGDVAQGQIPRLLDIVLYLCEKEHVEAGMIFQLLEDLTEMSTMRNCKD
VFRYIESKQDILGKSELFARGKLVMLRTCNQLLRRLSKANDVVFCGRIIMFLAHFFPLSE
RSAVNIKGVFNTSNETKYEKEAPEGISIDFNFYKTFWSLQEHFCNPASLPQAPAKWQKFT
SSLMVVLNTFEAQPLSDEEGNANNLEDEAATFSIKYLTSSKLMGLELKDPSFRRHVLVQC
LILFDYLKAPGKNDKDLPSETMKEEVKSCEDRVKNLLELTPPKGKEFLGSIEHILERERN
WVWWKRDGCPAFEKPPIEKKSVQDGVKKRKPRWRLGNKELAHLWKWADQNPKALTDPQRV
RTPAVTEYWKPLAEDMDATAGIEAEYHHKNNRVYCWKGLRFSARQDLEGFSRFTEHGIEG
VVPLELLAPGVRSKYQPKPSDRSKRAKKEETKGAAHQAEEGQFVTPTSEIDVEGSRADLE
ASAAPMDTDAAITENLSRDGTPDEHQKQSSDMEPGQIEADVEAETGMVDGETDAEVDLDA
VG
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggatatactaaggagggccatattggagccagggccacctgaaaatttcgctctcaag
acggtccaagaagtgataaaacctcagaagcaaacaaagctagtccaagatgagaatcaa
ttgttggaaaatatactgcggacattacttcaggagttggtgtcagcagcagttcagtca
ggggagaaaattatggaatatgggcaatcgattgttgatggagatgttgctcagggtcaa
attccccgccttcttgacattgtactgtatctttgtgagaaagaacatgttgaagctggt
atgatctttcagttattggaagatttgacggaaatgtctactatgagaaattgcaaagat
gtcttcaggtatatagagagtaaacaagacatactgggtaagtcggaactgttcgcacga
ggaaagcttgtgatgttgagaacatgcaatcagcttcttcggcgcctatcaaaggccaat
gatgtcgtgttttgtggacgaataatcatgttccttgctcattttttcccattatcagaa
cgctcagctgtcaatataaagggagttttcaacacatcaaacgagacaaaatacgagaaa
gaagctcctgaaggcatttctattgatttcaacttctacaaaaccttttggagtttacag
gaacatttctgtaaccctgcttccttgcctcaagctccggcaaagtggcagaaatttact
tccagtttaatggttgtgttgaatacctttgaagctcagcctttaagtgatgaagaaggt
aatgctaataatctcgaggatgaggcagctaccttcagcattaagtatctaacgagcagt
aaactgatgggtctagagttgaaagatccaagttttagacgccatgtccttgtgcaatgc
cttattttgtttgactatctgaaggccccagggaagaacgacaaagatttgccatccgaa
acaatgaaggaagaagtaaaatcttgtgaagaccgggtaaagaaccttctggaactgact
cctcctaaagggaaagaatttcttggtagtatcgagcatatattagaaagggaaaggaat
tgggtgtggtggaaacgtgatggttgcccagcatttgaaaagccaccaatagagaagaaa
tcagttcaggatggagtaaaaaagcgtaagccacggtggagactgggtaataaagaactc
gcacatttgtggaaatgggcagatcagaatccgaaggctcttactgatccgcaacgtgtg
cgtactcctgcagtcacagaatactggaaaccgttggctgaagatatggatgcaactgct
ggaatagaagccgaatatcaccacaaaaataatcgggtgtattgctggaagggtcttcga
ttttctgctcgacaggacttagaaggcttttctaggtttaccgaacatggtatcgaaggt
gtcgtgcctcttgaacttttggcaccgggtgtccggtccaaatatcaacctaaaccaagt
gacagatccaaacgtgctaaaaaggaagaaacaaaaggtgctgcacatcaagcagaagaa
ggccagttcgtgacacccacaagtgagattgatgttgagggaagcagagccgaccttgaa
gcatcagcagcaccaatggacactgatgctgcaattactgagaatctctcacgggatgga
actccggacgaacaccagaagcaaagctcggatatggagcccggacagatagaagcagat
gtggaagcagagacagggatggttgacggagagacagatgcagaagttgacttagatgct
gttggatag
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