Rubrobacter xylanophilus: Rxyl_1604
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Entry
Rxyl_1604 CDS
T00368
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rxy
Rubrobacter xylanophilus
Pathway
rxy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rxy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rxyl_1604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rxy03019
]
Rxyl_1604
03016 Transfer RNA biogenesis [BR:
rxy03016
]
Rxyl_1604
Enzymes [BR:
rxy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Rxyl_1604
Messenger RNA biogenesis [BR:
rxy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rxyl_1604
Transfer RNA biogenesis [BR:
rxy03016
]
Prokaryotic type
tRNA degradation factors
Rxyl_1604
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
DUF4327
Motif
Other DBs
NCBI-ProteinID:
ABG04566
UniProt:
Q1AVL2
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All DBs
Position
complement(1627273..1628880)
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AA seq
535 aa
AA seq
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MPAVLVRRGKYSVADPLFVDERRPILVARKLRRGAEAGDLVLVRARERKGSLRGEVVRVI
GPSSDPRNVYEALFASIGVSRSFPRGVEEEAEAVAGRSFGERRDLRRLPTVTIDGEDAKD
FDDAISILREDGGYRLWVHIADVTHYVDPGGALDRQALYRGNSVYLPGTVAPMLPARLSA
DVCSLRPHADRAAVTVEISVSGEGEVRGWKVYRSLICSDARLTYEAVDAFLEGRGEIEQP
ELVRTAFELSRRLKTNAAVRGKLELESREPEYEVDEEGVPVAASMRPSTPARELIEELMI
LANVCVARELRRRRGAVFRVHERPSPEDLELLAERLAAVGVRVEPTPENLGTIARMLKSR
ALGYLVLRSIPRALYSPGNVGHYGLALEDYTHFTSPIRRYADVLVHRALLGDELPENLPE
VAEHISEREWQSMICERTADEYTLMWLMRDRVGEVFEGTVVSTTSFGLFVEMETGATGLV
HASKLPGWWELEPSGVVLSNDEIGASYRVGDRVLVELLDITPLLQRAELRVVKRL
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcggtgctggtccgccggggcaagtactcggtcgccgaccccctcttcgtggac
gagcggcggcccatcctcgtcgcccgcaagctgcgccggggggcggaggccggggacctc
gtgctggtgcgggcccgggagagaaagggctcgctgcgcggcgaggtggtccgggtgatc
gggccgtcctccgacccgcgcaacgtctacgaggccctcttcgcctccatcggggtctcg
cgctccttcccccgcggggtggaggaggaggccgaggcggtcgcgggccgcagcttcggc
gagcggcgggacctgcgccgcctgcccacggtgaccatcgacggcgaggacgcgaaggac
ttcgacgacgccatctccatcctccgggaggacggcggctaccggctgtgggtgcacatc
gccgacgtgacccactacgtggaccccggcggggcgctcgaccggcaggccctctaccgg
ggcaactccgtctacctcccgggcaccgtggccccgatgcttcccgcccggctctccgcg
gacgtgtgctccctgcgcccgcacgcggaccgggctgccgtgacggtcgagatctccgtc
tccggcgagggagaggtgcggggctggaaggtctaccgcagcctcatctgcagcgacgcc
cggctcacctacgaggccgtggacgcctttctggagggtcggggcgagatagagcagcca
gagctcgtgcgcaccgccttcgagctctcccggaggctcaagaccaacgccgccgtgagg
ggcaagctggagctcgagagccgggagcccgagtacgaggtcgacgaggagggcgtcccc
gtcgccgcctcgatgcgcccctccacgcccgcccgcgagctgatagaggaactcatgatc
ctggccaacgtctgcgtcgcgagggagctgcgcaggaggcgcggggcggtcttccgggtg
cacgagcgcccctccccggaagacctcgagctgctcgccgagcgcctcgctgccgtgggg
gtgcgggtcgagcccacccccgagaatctgggcacaatcgcccgcatgctcaagtcgcgg
gcgctgggttacctcgtgctccgctccataccccgggccctctactcgcccggcaacgtg
gggcactacgggctcgcgctcgaggactacacccacttcacctcgcccatccggcgctac
gccgacgtgctcgtccaccgggcgctgctcggggacgagctgcccgagaacctccctgag
gtggccgagcacatctccgagagggagtggcagagcatgatctgcgagcgcaccgcggac
gagtacaccctcatgtggctgatgcgggacagggtgggggaggtcttcgagggcaccgtg
gtgagcaccacctccttcggtctcttcgtggagatggagaccggggccaccggtctcgtc
cacgccagcaagctgcccggctggtgggagctcgagccgagcggcgtggtgctctccaac
gacgagatcggggcctcctacagggtgggggaccgcgttctggtagaattgctggacatc
acgccgctgcttcagagggccgagctcagggtggtgaagaggctgtga
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