Rhagoletis zephyria (snowberry fruit fly): 108358187
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Entry
108358187 CDS
T08513
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03013
Nucleocytoplasmic transport
rze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108358187
09122 Translation
03013 Nucleocytoplasmic transport
108358187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108358187
03041 Spliceosome [BR:
rze03041
]
108358187
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
108358187
Spliceosome [BR:
rze03041
]
Complex C
Other components
EJC/TREX
108358187
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108358187
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
MBA1
Motif
Other DBs
NCBI-GeneID:
108358187
NCBI-ProteinID:
XP_017464857
LinkDB
All DBs
Position
Unknown
AA seq
746 aa
AA seq
DB search
MSSTVVTQQRPLGFIGLHTEFTKVLQEAFQKQDAHILRASYESFGANTDHDKKSPMDQAF
REMLLFRLSDEVEKVGALVRLSVEAVRAEIVSVTIPVVLLGDIFDAVTLDKCEQIFRFVE
EMVEVWKEDIFFSSCKNNILRMCNDLLRRLSRAQNTVFCGRILLFLSKFFPFSERSGLNI
VSEFNLDNVTEYGVDGKDLDDTVEDTVEDIPIKIDYNLYCKFWSLQDFFRNPNQCYSKAQ
WKMFQAHAGTVLEAFDSFKLEEPRVNSAGEKTENALTAADYLESMKMDLDASEFAAEVDN
PSCSEVNNQNVRQSDHFFAKFLTNPKLLTLQLSDSNFRRSVLVQFLILFQYLQLTVKFKT
ESNTLTTAQTDFIKETEAKVYKLLEDTPPNGKRFSRTVRHMLTREEMWNNWKNDGCKEFR
KPDDAEPETTANKDAGSSDVISTKPPASKRAKRTLGDSLKDAHRNSKFFLGNDVLTRLWN
YSPDNLQACKSEERNFLPNVETFLENPHEKNDPSFEWRALRLLARQSPHFFTFLNSPSYK
IADYLEGVRRRLAKDRLDNAKAALNANNVTSVGGNSNTESVIAGESNSEQGSNPQEAEGE
TDVVGVGDGDNDGDGEGDGDAMLTEEDVQGDLDKGDDDRNAHTKPVTATREQIEEIAPLI
GDDWKKLGKKLGYTVDELLYFETEHPDRDGGCIAMLSNWFADDDDASLDNWAYMLEGLEI
NAAAKAVKALIDRLTPKDDKVEVLSD
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgagttcaactgttgtaacacaacagcgcccccttggctttattggacttcataccgaa
tttacgaaagttctgcaagaagcgttccaaaaacaagacgcccatattttgcgcgcttcc
tatgaatccttcggagccaataccgaccatgataaaaagtcgccaatggaccaagcgttt
cgtgaaatgctacttttccgcttaagtgacgaggttgaaaaagtgggtgctcttgtgcgt
ctttcagttgaagcagtacgtgctgaaattgtctcagttaccatacccgttgtgttgctg
ggagacattttcgatgcggtcactttagataaatgcgaacaaatctttagattcgttgaa
gaaatggttgaagtgtggaaagaggacatatttttctcgtcatgcaagaataacattctc
aggatgtgcaacgatttattgcggcgtttatcgcgggcacagaatacagttttttgtggt
cgtatattgctatttctatctaaattctttcctttctctgaacggtctggactcaatata
gtttcggaattcaatttagacaatgttactgaatatggtgtcgacggcaaagacctggat
gatactgtcgaagacaccgttgaagatattcccatcaaaattgattataatttatattgc
aaattttggtcgcttcaagacttttttcgcaatcccaatcagtgttacagcaaagcccaa
tggaaaatgtttcaagcgcacgctggtacagtgttagaagcttttgatagcttcaagcta
gaagagccacgtgtaaatagcgcaggagaaaaaaccgaaaatgctttaacggctgctgat
tatttggaaagcatgaaaatggatttggatgcttctgaatttgcagcagaagtggataat
ccaagttgtagtgaagtaaataatcaaaatgtgcgccagtccgatcacttctttgccaag
tttctgacaaatccaaagctgctgaccctacaattatctgattccaactttcgacgttca
gtcttagtgcagttcctgattctgttccaatatcttcaattgactgttaaatttaagact
gaatcaaatacattgaccaccgcgcaaacagattttatcaaagaaacagaagcaaaagta
tataaattgctcgaagatacaccacctaatggaaagcgtttttctcgcaccgtccgacat
atgttaactcgcgaggaaatgtggaataactggaaaaatgatgggtgtaaggagttccgc
aaacccgacgacgctgaaccagagactaccgcaaataaggacgctggaagtagtgatgtc
atctctaccaaaccaccagcatccaagcgtgccaagcgcaccctaggggacagtttaaaa
gatgcacaccgcaatagcaaattctttctgggaaatgatgtcttgacacgtctctggaat
tattcgcctgacaatctgcaggcatgcaaaagcgaagagcgcaatttcttaccaaatgtc
gaaacattccttgaaaatccgcatgaaaagaacgatccatcttttgaatggcgcgcactt
cggttgctagcacgccagtcgccacactttttcacattcttaaactcgccgtcatacaaa
atagctgactacttggagggcgtacgacgccgtttggccaaggatcgcttagacaacgct
aaggcagctctgaacgccaacaacgtgacatcagttggtggcaactcaaacacagaatct
gtcattgcaggcgaatcaaatagcgaacaggggtctaatcctcaagaagcagagggtgaa
acagatgttgttggtgttggtgacggtgacaatgacggcgacggtgagggcgatggcgat
gcaatgctaaccgaagaagatgttcaaggtgacttggacaaaggcgatgatgatcggaac
gcacacaccaaaccggtgacggcaaccagagaacaaatagaagaaatcgcaccactcatt
ggtgacgactggaagaaattgggcaaaaaattgggctacactgttgatgagctactctac
tttgagacggagcatccagatcgcgatggtggctgcatcgcaatgctgagtaattggttt
gccgatgacgatgatgccagtcttgataattgggcctatatgcttgaaggtttggaaata
aatgccgctgcaaaggcggtgaaagcgctgatagaccgtcttacaccgaaagacgacaaa
gtggaggtgctgtcagattag
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