Rhagoletis zephyria (snowberry fruit fly): 108370391
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Entry
108370391 CDS
T08513
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108370391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rze03041
]
108370391
Enzymes [BR:
rze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108370391
Spliceosome [BR:
rze03041
]
Complex A
U2 snRNP components
U2 related factors
108370391
Complex B
108370391
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
108370391
NCBI-ProteinID:
XP_017481214
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All DBs
Position
Unknown
AA seq
1121 aa
AA seq
DB search
MSKSYSGRDRERDRDRDRDRERDKEREREKRRYSRSRSRTPKEGKSFRNDNVISRNRDDR
KKDREREQREIDRNRREDKRRKRSRSKSNPKDYDREKIKFFERGRDKERDRDREREREQR
ERDRERERVRDRERDRERDRDRDRARDRELEVESRRNVQPVVKTIPEESSSSSEEEIDKE
EEQRRLEQEMIKRRERIERWRAERKLKELEGKKDLKSLPVQTPISTSKKWSLEDESEEED
NNVNQMPPTSDIKKEPDSPPPKFQRLKKLQDDDEENDAHQKIKKLSKLDDDDNEDEKSTE
NKTAENEDIDPLDAYMQEVDKEVRNVNHIVTQPKKQQGVVILTGVAKKNTEKSNKGELLE
QNMDSLEYSSEEELEDIKDTAANLANKHRKELAKIDHSGVNYTPFRKNFYVEVPELARMT
QQEVDKYRADLEGIQVKGKGCPKPIKTWAQCGVSKKEMDTLRKLGFEKPTPIQCQAIPAI
MSGRDLIGIAKTGSGKTLAFILPMFRHILDQSPLEDGDGAIAVIMAPTRELCMQIGKDIR
KFSKTIGLHPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYI
VLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGR
SVVCKDVEQNVAILEDEAKFFKLLELLGVYQEHGSIIVFVDKQENADILLRDLMKASYPC
MSLHGGIDQFDRDSTILDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHR
CGRTGRAGKKGCAWTFLTTEQARYGGDIIRALELSDAKVPEDLQKLWTEYKAAQEAEGKK
VHTGGGFSGKGFKFDEQEANAAKESKKLQKAALGLADSDDEEDIEQDIDQQIEQIFAAKR
TVKDTSIPTPAVTASVAPTTTTASVSSVPLAASGSDKLELAKRLASKISTTKNLGADGKV
NPQVSAETILKGGGTGQPMITARSVVEQLAAKLNNKLNYQPKDDEDGVNPLLPNQPNSFT
KYEEELEINDFPQQARWKVTSKEALAQISEYSEAGLTVRGTYVPPGKNPPEGERKLYLAI
ESCSELAVQKAKREITRLIKEELLKLSSAHHVFNKGRYKVL
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaatcgtattctgggagagatcgggagagggaccgtgatagggatcgtgaccgg
gaaagggataaggaaagggaacgtgagaaacgacgatattccagaagcagatctagaaca
cccaaggaaggcaagtcctttcgaaatgataatgtaatcagcagaaatcgagacgatcgt
aaaaaagatagggaaagggaacagcgagaaatcgaccgtaataggcgtgaagataaacgt
cgaaagcgctccagatctaaatccaatccaaaagattacgaccgtgaaaaaataaagttc
tttgaacgtggaagagataaggaaagagatcgtgatcgagaacgggaacgtgagcaacgt
gaacgtgatagggaacgagaaagagttagggatcgagaacgtgatcgggaacgtgataga
gatcgagatcgggcacgggatcgtgaactagaggttgaaagtaggcgaaatgtacagccc
gttgtaaagacaataccagaggagtctagcagctcttcggaagaagaaattgacaaggaa
gaagagcaacggcgacttgaacaggaaatgataaaacgaagagagcgcattgagcgatgg
agggcagaacgtaaattaaaagagctggaaggtaaaaaagatcttaaatcccttccggta
caaacgccgattagcacatctaaaaagtggagcttagaggacgaatccgaagaggaagat
aataatgttaatcaaatgccaccaacatctgatattaaaaaagagccggattctccacct
ccgaaattccaacggttgaaaaaattgcaagatgacgatgaggaaaatgatgcacatcag
aaaataaaaaaattatccaaacttgacgatgatgacaatgaagacgagaagtctacagaa
aataaaactgcagaaaacgaagatattgatccattagatgcctatatgcaagaagtcgac
aaagaagtgaggaatgtaaatcacattgtgacgcagccgaaaaagcaacagggtgttgtc
attcttacaggggtggccaagaagaatacagaaaaatcaaataaaggcgaactccttgaa
caaaacatggacagccttgaatattcaagtgaggaagagttggaagatataaaagacaca
gctgcaaatttggcaaacaagcatcgcaaagaactagctaaaatcgatcattccggcgtg
aattatacgccgtttcgaaaaaatttttacgttgaagtaccagagttagctcgaatgacc
caacaagaagtcgataagtaccgcgctgacctggagggaattcaagtaaaaggaaagggc
tgtcctaagcctattaagacatgggcgcaatgtggtgtcagcaagaaagaaatggataca
ttacgcaagcttggcttcgagaaacccacgcccatccaatgtcaggcgattccggcaatc
atgtctggacgagatttgataggtattgctaaaactggcagtggcaaaacgctcgcattc
attttaccaatgtttaggcacatactggatcagtcgccactagaggatggtgatggcgct
atcgctgttataatggcaccgacacgggagctttgtatgcaaattggcaaggatatacga
aagttctcaaaaactatcggtttacatcccgtatgcgtctatggcggcactggaatttcc
gaacaaatagcagaattgaagcgtggcgcggagatcattgtgtgtactcccggccgcatg
atcgacatgttggcggccaattctggacgtgtaacaaatttgcgcagagtgacgtatatt
gtactggacgaagctgatcgcatgttcgatatgggttttgaaccgcaagtgatgcgcatc
atagacaatgtgcgtccagataggcaaacggtcatgtttagtgcaacattcccgcgtcaa
atggaggcgctggctcggcggatacttaagaagccaattgaggtaattgtcggcggacga
tctgtggtgtgtaaggatgttgaacaaaacgtggctatattggaggatgaagcgaaattc
tttaaacttcttgagctgctgggtgtatatcaagaacatggaagtataatagtgttcgtg
gacaaacaggagaatgccgacattttgctcagagatcttatgaaagcttcatatccgtgt
atgagtttgcacggcggcattgatcaattcgatcgtgattccacaatacttgacttcaaa
tcaggtaaagtgcgtcttttaattgcaacgtctgtggctgctcgtggcttagatgttaaa
gatttaatattggtagtaaactatgacgtaccaaatcactatgaagactacgttcacaga
tgtggacgtactggccgagctggtaaaaaaggttgtgcttggacctttcttacaacagaa
caagcccgatatggcggggatattatacgtgcgcttgaattatctgatgctaaagttcct
gaagatttacaaaagctttggacggagtataaagctgcacaagaagcagaaggtaagaaa
gtgcatactggtggtggatttagtggcaaaggatttaaatttgacgaacaagaagctaat
gctgcaaaggaaagcaaaaagttgcagaaagctgctcttggcttggctgattcagatgat
gaagaggatattgaacaagatatagaccagcaaattgagcagatatttgcagcaaaacga
acggtaaaagatacctcgattccaacacctgcggtaacagcgtcagtagcacctacaaca
acaacagctagtgtttccagtgtaccactggctgcttctggctcagataagttggaatta
gcgaaacgtcttgcctcaaagatcagtacaacaaagaatttgggggctgatggcaaagtg
aatccgcaggtatctgccgaaaccatacttaaaggcggtggcaccggtcaacccatgata
acggcccgctccgtagtagagcaattggcagctaaattgaataacaagttaaattatcaa
cctaaagatgacgaagatggcgtaaatcctttgttacccaaccagcctaattcgttcacc
aaatatgaagaagagctggaaatcaatgatttccctcagcaggcgcgctggaaggtaaca
tccaaagaagcattagcccaaatatcagaatattcggaagctggtctcacagtgcgtgga
acatatgtaccacctggcaaaaatccacccgaaggtgaacgtaaattatacttggctatc
gaaagctgcagtgagttagctgtacagaaggcaaaacgagaaataacccgtcttattaaa
gaggaactgttgaagttgagttcagcgcatcacgtgttcaacaaaggcagatacaaggtt
ctctag
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