Rhagoletis zephyria (snowberry fruit fly): 108371677
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Entry
108371677 CDS
T08513
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108371677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108371677
03041 Spliceosome [BR:
rze03041
]
108371677
03009 Ribosome biogenesis [BR:
rze03009
]
108371677
03016 Transfer RNA biogenesis [BR:
rze03016
]
108371677
Enzymes [BR:
rze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108371677
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
108371677
Spliceosome [BR:
rze03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108371677
Complex C
U4/U6.U5 tri-SnRNP related factors
108371677
Ribosome biogenesis [BR:
rze03009
]
Eukaryotic type
Pre-60S particles
Helicases
108371677
Transfer RNA biogenesis [BR:
rze03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
108371677
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
ATPase_2
Motif
Other DBs
NCBI-GeneID:
108371677
NCBI-ProteinID:
XP_017482771
LinkDB
All DBs
Position
Unknown
AA seq
1028 aa
AA seq
DB search
MAYVDDLFDCFNEDNDESLNSNPVVEWDKVKKDPSEEKKIQGREKRGSTAVKESTDGCEA
PQKRLKETESILDDICIDALRSRIAVHVIESPESCTHEVAVYPGQEYIPIQTFMGTPAKE
YPFVLDPFQKEAILCIDNQQSVLVSAHTSAGKTVVAEYAIAKSLGCKQRVIYTTPIKALS
NQKYREFNEEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIH
YMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTP
LQHYIFPAGGDGIHLIVDEKGQFKEENFTTAMAVLQNTGEAAKGDQRGRKTGIRGVDSGQ
SNIFKIVKMIMERNFAPVIIFSFSKKDCEIYAMQMAKLDFNTAEEKKLVDEVFNNAMDVL
SEEDRQLPQVENVLPLLKRGIGIHHGGLLPILKEIIEILFGEGLLKALFATETFAMGLNM
PARTVLFTAPRKFDGKSFRWISSGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPAIGRGI
VQGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQSSIPELYKQVQDKQLE
LEKIKITEEHSVASYHHIRKQLDSLGKQFKNWITKPEYLVPFLQPGRLIKVQNDREEFDW
GIVVNFKKQTNNAKNPTKVETVIVVDVLLHVTEESAKADEPKPCKPDQKGNMEVVPVLHT
LISQISSLRVYYPNDLRPADNRRSVLKTIAEVKKRFPKGPPLLNPITELNIKNPEFKEIV
GSIDKFEERLFAHPLHNSAELDRIYEHYTKKLKVQDELKSVKTKLKEARSLLQMDELKHR
KRVLRRMEYCTTADVIEFKGRVACELSSADELLLTEMIFNGIFNEISSAQSVALLSCFVC
DEKSSETPKATEELSGPLRSMQDLARRIAKISTDCKLTVDEEAYVDKFKPFLMDCVLAWC
KGASFLSVCRMTDIFEGSIIRCMRRLEELLRQLCQAAKTIGNTDLENKFSEGVRLLKRDI
VFAASLYL
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggcctatgttgacgatttatttgattgttttaatgaggataatgatgaaagcttaaat
tccaatccagttgtagaatgggataaagttaaaaaagatccttcggaagaaaaaaaaatt
caaggccgtgaaaagcgtggaagtacggccgttaaagaatcaacagatggttgcgaagct
ccacaaaaacgtttaaaagaaacagagtcgatattggatgatatatgcatagacgcattg
cgttctcgtatcgcagtccacgttatcgaaagtccggagtcatgcacgcacgaggtggcg
gtgtatccagggcaggaatatattcctatacaaaccttcatgggaacaccagcaaaagag
tatccatttgtattggatccctttcaaaaagaagcaatcctttgcattgataatcaacag
agcgttctggtgtcagctcacacctcggcaggcaaaacggtagttgccgagtatgctatt
gcgaaatccctgggttgcaaacagcgtgtgatttataccacaccaattaaagcgctctcc
aatcaaaagtatcgtgaatttaatgaagaattcaaagatgttggcttagttaccggtgat
gtgacaataaatccgtcagcttcttgtcttatcatgaccactgaaattttgcgaaatatg
ttgtatagaggaagtgaaattatgcgtgaagtcggttgggtcgtattcgacgaaattcac
tatatgcgggataaggaacgtggtgtcgtatgggaggagacacttatattgctaccggat
aatgtgcgttatgtgtttctttccgctaccattcccaatgcccgccaatttgcggaatgg
gtttgccatctccacaagcaaccatgccacgtggtttatacagattatcgaccaaccccg
ctacaacattatatatttcctgctggaggcgatggcatccatcttatagttgacgaaaaa
gggcaatttaaggaagaaaattttacaacggcaatggcagttttgcagaacactggcgaa
gctgcaaaaggcgatcagagagggcgtaaaaccggcattagaggggttgacagtggccag
tcaaatattttcaaaattgtcaaaatgataatggaacgaaattttgcaccagtaataatt
ttttcattcagtaaaaaagattgtgaaatatatgctatgcaaatggctaagctggatttt
aatactgctgaagagaaaaaactggtagatgaagtatttaataatgccatggatgtgctc
tctgaagaagatcgtcagttaccacaagtagaaaatgtattaccgttgttaaaacgtggc
attggtatacatcatggaggtcttttaccaattctcaaagaaattattgaaattttgttt
ggagaaggtttacttaaggcacttttcgccacagaaactttcgcaatgggcttaaatatg
ccagctcgcactgtactttttacagcaccacgcaaatttgacggcaaaagttttaggtgg
atttcctcaggcgaatacatacagatggccggccgagctggcagacgtggcttggatgat
aaaggtatcgttattttaatgattgacgaaaaagtatcgccagcaattggccgcggaatc
gtgcaaggaaaagcagatccaataaattcagcatttcatttaacctataatatggtgttg
aatctgctgcgcgtagaagaaattaatcctgaatacatgttagaacgttcattttttcag
tttcaaaaccaatcttcaatacctgaactttacaaacaagttcaagacaagcaacttgag
ttggaaaagattaaaataaccgaagagcatagtgttgcatcgtatcatcatatacgcaaa
caactcgattcccttggcaagcagttcaaaaattggattacgaaacctgaatatctagta
ccatttttgcaaccaggacgtctcataaaagtacaaaacgacagagaggagtttgattgg
ggtatagtagtaaatttcaaaaaacaaacaaataatgcaaaaaatcccacgaaagttgag
acagtcatagtagtagatgttttactacatgttactgaggaatctgccaaagccgatgaa
cctaaaccgtgcaagccagaccaaaaaggcaacatggaagtggttcctgttcttcacact
cttatatcacagatttcttctttgcgtgtatattatccaaacgacttgcgtccggcagac
aatcgcagaagtgttcttaaaacaattgctgaggttaaaaaacgatttcctaaaggccca
ccgcttcttaatcctataacagaattgaatataaaaaatccagaattcaaagagattgtc
ggttctattgataagttcgaagaaagacttttcgcacatcccttgcataactctgctgaa
ctggacaggatttacgaacattatacgaaaaaactaaaagtccaagatgaattgaaatcg
gtaaaaactaaattaaaagaggcgcgcagtttgctacaaatggacgagttgaaacaccgt
aaacgtgttttgcgtcgaatggaatattgtacaacagccgatgtgatcgagtttaaggga
cgtgttgcttgcgagttaagttctgcagatgagttacttttaacagaaatgatattcaac
ggaatattcaatgaaatttcatcggcccagtcagtagcattactttcatgtttcgtctgc
gatgaaaagtcgtcagaaactcccaaggcaacggaagagttgtcgggcccattacggtca
atgcaagatctggcccgacgtattgccaaaatatctactgattgcaagttaaccgtggac
gaggaagcgtatgtagacaaatttaaaccatttctaatggactgtgtattggcttggtgc
aaaggtgcttcattcttgagcgtgtgtaggatgacggatattttcgaaggttcaattatt
cgctgtatgcgtcgcctggaagaattgctacgacagctatgccaagcagcaaaaacaatc
ggaaacacagatttggagaacaagttttctgagggcgtacggcttctaaaaagggatatt
gtttttgcggcatctctttatttgtaa
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