Rhagoletis zephyria (snowberry fruit fly): 108381279
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Entry
108381279 CDS
T08513
Name
(RefSeq) LOW QUALITY PROTEIN: tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108381279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108381279
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
108381279
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_8
TPR_1
TPR_16
TPR_14
TPR_6
TPR_12
TPR_11
TPR_19
TPR_7
ANAPC3
TPR-S
RNPP_C
FAT
Motif
Other DBs
NCBI-GeneID:
108381279
NCBI-ProteinID:
XP_017493186
LinkDB
All DBs
Position
Unknown
AA seq
752 aa
AA seq
DB search
RCYFKIGEMDKLKTLHLNTVQQAEFLMAPLAGIDALTNSTDSESFDTLFLLSKLHLQLAN
YAAALNCMLKATRLRPYYAECFHYLGKIYYGTKDIVRSRKCFEKCVNLNPICESAVNNLS
AIYQQLGEEDLNVALLLNTLKHMKCEDSKHIQYKLGLHYFHVNKWDDAIQSFRTAIKLDN
SCMNYWESLGDAYAERGSYNSAIRVFQKILEMNPSNIYAKLQIALIKSTVRMYTEAIAEF
DDLLRGHPDYLPGLKGAAEAHIGLANNLKLEHLYGRCKDHLQLAVNHLQSAFLTLNGQSM
FWLWRLTANVFVQTALMPNSLAYLEVSGKLAKLEDETAILQRKDLFTLAARFYTCAIKLK
ANTFIWYEFALCCYYSAIYIPDEATSHLALAIKASKLAVNEQSDRWQNWNLLGVINLHKE
INQLPLAQHCFIQALTLEXKSYTTWTNLGVLYLKLNEIKLANQAFQRAQQSSPIYGNAWI
GQAMIAESIGEEEEALDLFRHCQQFEYHPESSLGYAHWVCMVLTDAEKCKIPHYRHAIDS
MYADVVALDAINWHVINEEKDATSAALSFQGFLSLRQRHYRPAVRAYLQAVKVTTPSAER
DKLLTSLGYLYLKLNQPNDAIQIFNRVVHSSLNAIIGLALAFVRAGQHQEAYSVYNSVLK
SMADNNEEKAGMILVAMAAMVYSSQGEADTKTILYQCILLKNSPIQALYSACALGILHHD
NQLTTTILAELKKYENSEAYCAHISYLTAQYX
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
agatgttacttcaaaataggcgaaatggacaaactaaagacattgcatttaaatacagtg
caacaagccgaatttcttatggcgcctcttgctggaatcgatgctttgacaaactccacc
gattctgaatcatttgatacacttttcttactctcaaaattacatttacaattggcaaac
tatgctgccgctttgaattgtatgcttaaggcaactcgtttacgaccatattacgcagaa
tgcttccattaccttggtaaaatatactatggcacaaaggatatagtgcgctcacgaaaa
tgttttgaaaaatgtgtaaatttaaaccccatatgcgagagcgcagtgaataatttaagc
gctatttatcagcaactaggtgaagaggatttgaacgttgcattgctgcttaatacactc
aaacatatgaagtgtgaagattctaaacatatacagtacaagctcggtttgcattatttt
catgttaataagtgggatgatgccatacagtcgttccgcacagctattaagctcgataac
agttgcatgaattattgggaatctctgggtgacgcttatgcagagcgtggttcttataac
tctgctatacgagttttccaaaaaatactcgaaatgaatccaagtaatatttacgctaaa
ctacaaattgcattgattaaatctactgtgcgaatgtataccgaagctatagcggaattc
gatgacttgctacgcggccatcccgattatttacctggtttaaagggcgctgctgaggca
catattggtctggcgaacaatttaaagttggagcatctatatggacgttgtaaggaccat
ttgcagttggctgttaatcatttgcaaagcgcattcttgactttgaacggtcaaagtatg
ttttggttgtggcgcctaaccgccaatgtgtttgtacaaacagcactcatgccgaactca
ttggcatacctggaagtatcagggaaactggcaaagttggaagatgaaacagcgattttg
caaaggaaggaccttttcacattagctgcaagattttacacctgcgccattaagttaaaa
gcaaacacatttatttggtatgaattcgcattgtgttgttactactccgcgatctatatt
cccgatgaagcaacttctcatttggcattggctatcaaagcctccaaattggctgtaaat
gagcaaagcgaccgttggcaaaattggaatttgcttggagtaataaatttgcataaggaa
atcaaccaattgcccttagcacagcattgtttcattcaggcactgacgcttgaancgaaa
tcttatacaacttggacaaatctgggtgtgctctacttaaagctgaacgaaataaagctt
gctaatcaggcatttcagcgtgctcagcagtccagtcctatatatggaaatgcgtggatt
ggacaagctatgatcgccgaaagtattggcgaagaggaggaagctttagatcttttcaga
cactgccagcagtttgaatatcaccccgagtcctcactgggatatgcgcactgggtttgc
atggtgttaacggatgcggaaaagtgcaaaataccacattatcgacatgctatcgatagc
atgtatgctgacgtggtggcgttggatgcaattaattggcacgttataaacgaagaaaaa
gatgcaacttctgccgcactttccttccaaggattcttaagtttacggcagcgacattat
cgtcctgcagtgagagcataccttcaagctgtgaaagtgacaacacctagtgctgagcgt
gataaattactcacgagcttaggttatctctacttgaagttaaatcagcccaatgatgct
atacagattttcaatcgagtagtacattcatcactcaatgccattattggattggctctg
gcttttgtgcgcgctggccaacatcaggaggcatattcagtatataactctgtattgaag
agtatggcagataataacgaggaaaaggcgggcatgatattggtagcaatggccgcgatg
gtgtattcgtcgcaaggagaagcagataccaaaacgattctatatcaatgcatcttgctt
aagaactctcccatacaggctctctattctgcctgtgcactgggtattctgcatcatgat
aatcaactaacaacaactattctggcggagttgaagaagtacgaaaatagcgaagcttat
tgtgcgcatatttcatatttgacggcacaatactnctga
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