Sphingomonas abietis: PBT88_16295
Help
Entry
PBT88_16295 CDS
T09690
Name
(GenBank) type IV secretion system DNA-binding domain-containing protein
Organism
sabi
Sphingomonas abietis
Motif
Pfam:
TrwB_AAD_bind
TraG-D_C
T4SS-DNA_transf
AAA_16
AAA_19
FtsK_SpoIIIE
AAA_11
AAA_22
GvpD_P-loop
DUF87
Zeta_toxin
SLFN-g3_helicase
AAA_7
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
WBO21712
LinkDB
All DBs
Position
complement(3454107..3456155)
Genome browser
AA seq
682 aa
AA seq
DB search
MSIFRHDTLGSWTRGGQAIVHNVRMTTQVFYQTCLAAFVIWIGGTIWYALEQSSAYERFV
MLKIAQAYSMGDTIPGNATPILFKTPAGHQYWTSPKDLIGSGVAHKTLASFETYMLHGAA
IAGAFALAMLLWAWFYFTRTGRGLGSNQFLRGARFGTVRQVRRALWRSAKGSCSIGGVNV
PDAFEPEHILICGAPGTGKTNIIVKMLDGIRKRKRRAIVYDTAGTFVEKFYRPGIDVLLN
PLDARADSWSPWVDVPRDYHYDQIAESTIPDKAGDPFWAKAARGTLVAVMRKLARQERTL
ISILLDTLLRSKLKDLAAFAAGTDAAAFISTEGERTSAGIQAELASVMRSFSYLDDTVDG
LSIRDWVGNEKDDSWLFITVKADQLPSLRPLITVWLDIAISAIMSMAPDRNRRLYCVIDE
LPTLQKLPSLSDFLARARKYGGCGILGFQSYPQLEATYGIQDAAAITGYCSTWVALRAND
TPTAKHVSENLGQVEQVEANEGMSYGVNDMRDGVNLSRMQVTRPLVMHTEVTNLPNLMGF
LRFGRSLPVVRFEDSYNKVASIADAFEERPALPIRLTPVGQILAPDPEADQPPKRTRTAP
SRAKRIKPQVDVDELPLEIAGVEQPQASAPRPEPDPPASPAPNRSDPPASETPPLELFGK
AAGFRLRQHGRQDGDRNTARPA
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcttccggcacgatacgctgggctcctggacgcgcggtggccaagccatcgtc
cacaacgtccgcatgacgacgcaggtcttctaccagacctgccttgccgcgttcgtgatc
tggatcggtggcacgatctggtacgcgctcgagcagtcgtcggcatacgaacgcttcgtc
atgctcaagatcgcccaggcctattcgatgggcgatacgattccgggcaacgcgacgccg
atcctgttcaagacgcccgcgggtcaccaatattggacctcgccgaaggacctcatcggc
tcgggcgtcgcccacaagacgctcgcttcgtttgagacctacatgctccacggcgccgcg
atcgccggggcgttcgcgctcgcgatgctgctctgggcatggttctatttcacccggacc
gggcgtggtctcggctcgaaccagttcctccgcggtgctcggttcggcacggtccggcag
gtccggcgtgcgctgtggcggagcgccaagggctcctgctcgatcggcggtgtgaacgtg
cccgatgcgttcgagcctgagcacattttaatctgcggcgctcccggcacgggcaagacc
aacatcatcgtcaagatgctcgacggcatccgcaagcggaagcggcgcgccatcgtctat
gataccgccggcaccttcgtcgagaagttttaccggcccggcatcgacgtgctgctgaac
ccgctcgacgcgcgcgccgactcttggtcgccatgggtcgatgtgccacgcgactaccat
tacgaccagatcgcggagtcgacgatcccggacaaagccggcgatccgttctgggcgaag
gccgcgcgcggcaccctggtcgcggtcatgcgcaagctcgcgcggcaggagcggacgctc
atttcgatcctgctcgacactctcctgcgctcaaagttgaaagaccttgccgccttcgcc
gccggcaccgacgcagcggcgttcatctccaccgagggcgagcgaaccagcgccggcatc
caggccgagctcgcctcggtgatgcgtagcttctcgtacttagacgacacggtggacggc
ctgtcgatccgcgactgggtcgggaacgagaaggacgacagctggctgttcatcaccgtg
aaggcggatcagcttccgtcgcttcgtccactgatcacggtgtggctcgacatcgccatc
agcgcgattatgagcatggcgcccgatcgcaaccgccgtctctactgcgtcatcgacgag
ctgccgacgctccagaagttgccgtcgctatccgacttcctggcccgcgcccggaagtat
ggtggatgcggcattctcggcttccagagctatccccagctcgaggcgacctatggcatc
caggatgccgctgcgatcaccggctattgctcaacctgggtggcgctgcgcgccaacgat
acccccaccgccaagcacgtcagtgagaacctggggcaggtggagcaggtcgaagccaat
gagggcatgtcctacggcgtgaacgatatgcgcgacggcgtgaacctctcgcgcatgcag
gtcacccgaccgctggtcatgcacaccgaggtgaccaacctcccgaacctcatgggcttc
ctccggttcgggcgcagcctgccggtggtccgattcgaggatagctacaacaaggtcgca
tccatcgcagacgctttcgaggaacgacccgcactccctatccggctcacgcccgttggg
cagatcctggcacccgatccagaggccgatcagccgccgaaacggaccagaacagctccg
agtcgtgccaagcggataaagcctcaggtcgatgttgatgagctgccgctggaaatcgcc
ggagtagaacagcctcaagcttcggcaccccgtcccgagccggatccgcctgcgtcaccg
gcgccaaacaggagcgatccgccagcgtcggagacgccgccgctcgagctgttcggaaag
gctgccgggttccggttacgccagcatggtcgccaagacggtgaccgcaacactgcgagg
ccggcatga
DBGET
integrated database retrieval system
