Flaviramulus sp. BrNp1-15: MBM09_02455
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Entry
MBM09_02455 CDS
T07901
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sabu
Flaviramulus sp. BrNp1-15
Pathway
sabu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sabu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MBM09_02455 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sabu03400
]
MBM09_02455 (mfd)
Enzymes [BR:
sabu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MBM09_02455 (mfd)
DNA repair and recombination proteins [BR:
sabu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MBM09_02455 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
SBP_bac_3
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ULC59851
LinkDB
All DBs
Position
558606..561965
Genome browser
AA seq
1119 aa
AA seq
DB search
MSKTTLSKTYVQALQTQNLRKSIAQTQSKTHLKGLVGSSFSFVISSVFKEANKPFLIVFN
DKEEAAFYLNDLEQLCGDKDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSQKKPAI
IVTYPDALFEQVVTRKELERNTLKVAVNDNLSIDFVNEVLFEYQFKRVDFVTEPGEFSVR
GGIVDVFSFSHDEPYRIEFFGDEVDSIRTFDVETQLSIEQIKKINIIPNVANKLLQESRQ
SFLKYIAQKTVVCIKNAELLFSRIDDFYSKAEEAFKTLSSDIKHAQPNELFCNSALLKKQ
LLDFSIIEFGASAVMFNAIETSNNQLIEYNTTPQPSFNKQFNLLIEDLNANHDKGYTNYI
ACVSEQQAKRFHDIFDDSHLEVKPYNTVIQSLHQGFIDHDSKIVCYTDHQIFERYHKFHL
KNGYAKKQAITLKELTNLDIGDYVTHIDHGIGRFGGLQKIDVEGKKQEAIKLIYGERDVL
YLSIHSLHKITKFNGKDGKPPKIYKLGSKAWKTLKQKTKARVKHVAFNLIKLYAKRKTEK
GFQYNPDSYLQHELEASFIYEDTPDQSTATADIKADMESERPMDRLVCGDVGFGKTEVAI
RAAFKAVDNGKQVAVLVPTTILAYQHSRTFKERLKEFPVTVDYLNRFRTAKEKRETLEAL
EQGKVDIIIGTHQLVNKNVKFKDLGLLIVDEEQKFGVAVKEKLKTLKDNVDVLTLTATPI
PRTLQFSLMAARDLSVITTPPPNRYPIESHVIRFNEETIRDAVSYEIERGGQIFFIHNRI
ENIKEVAGMIQRLVPDAKVGVGHGQMEGKKLEQLMLAFMDGAFDVLVSTTIVESGLDVSN
ANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTDDARKRITALEQFTEL
GSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELKENEFKDLYDEDE
ADKVYVKDVTIDSDFELLFPDSYVNNIAERLNLYTQLNNLKTEAELNTFEKELIDRFGEL
PKQVTDLLNSVQIKWLATKIGFEKIIMKQGKLIGYFINDQQSRFYQSSNFTKVLQFVQSH
PNACKMKEKQTRNGLRLMLTFNNIKSVKQALNALQPIVA
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaaactacactctcaaaaacctatgtacaggctttgcaaacacaaaatctgcga
aaatctattgcccaaactcaaagtaaaacccatttaaaaggccttgtaggttcttcattt
tcatttgttatatctagtgtttttaaagaagctaataaaccttttttaattgtttttaat
gataaagaagaggctgccttttacctaaacgatttagaacaattatgtggagataaagat
gtattgttttatccaggtagttaccgcaggccttatcaaatagaagaaaccgataatgct
aatgtgttattacgtgccgaggttttaaaccgtataaattcgcaaaaaaaaccagcaata
attgttacctatccagatgcactttttgagcaagttgtaaccagaaaagagctagagcgt
aacacattaaaagtcgctgtaaacgataatttgtctatagattttgtaaacgaagttttg
tttgaataccaatttaaacgtgtagattttgttaccgaacccggtgagttttctgtgcgt
ggaggtattgtagacgtgttttcattttctcatgacgaaccttatagaattgagtttttt
ggtgatgaggttgatagtataagaacttttgatgttgaaactcaactgtcaatcgagcag
attaaaaaaatcaatatcattcctaatgttgctaataaattattacaagaaagcaggcag
agtttcttaaaatatatcgctcaaaaaacagtagtttgtataaaaaatgctgaattacta
ttttctagaatagacgatttttacagtaaagcagaagaggcttttaaaaccctttcttct
gatataaaacatgcgcaacctaatgagttgttttgcaattcagcattattaaaaaaacaa
ttactagatttttcaattattgagtttggtgcttctgctgttatgtttaatgcaatagaa
acatctaacaaccaactcatagaatataacaccacaccacaaccttcatttaataagcaa
tttaatttgctgatagaagatttaaacgcaaatcacgataaagggtataccaattatatt
gcttgtgtaagtgagcagcaagctaaacgttttcatgatatttttgatgattcgcattta
gaagtaaaaccatataacaccgttatacaatcactacatcaggggtttatagaccacgat
tctaaaatagtttgttataccgatcatcaaatctttgaacgttatcataaatttcatctt
aaaaatggttatgctaaaaagcaagctataactttaaaagagcttactaatttagatatt
ggcgattatgttacacatatcgatcatggaattgggcgttttggtggacttcaaaaaata
gatgttgaaggtaaaaagcaagaagctataaaattgatttatggggagcgcgatgtattg
tatttaagcatacattcgcttcataaaatcactaagtttaatggaaaagatgggaaacca
ccaaaaatttataaacttggtagtaaagcttggaaaaccttaaaacaaaaaacaaaagca
cgtgtaaaacatgtagcatttaacctgattaaactttacgctaaacgaaaaaccgaaaaa
gggtttcaatacaatccagatagctatttgcaacatgaattggaagcttcttttatttat
gaagatacacctgaccaaagtactgcaacggcagatattaaagcagatatggaaagcgaa
cgtcctatggacagattggtttgtggtgatgtaggttttggtaaaaccgaagtagctata
cgtgcagcttttaaagctgttgataatggtaaacaagttgcggttttagtaccaacaaca
attttagcgtatcaacactctagaacatttaaggaacgacttaaagagtttcctgtaaca
gttgattatttaaacagatttagaacagccaaagaaaaacgtgaaactctagaagctcta
gaacaaggaaaagtagatattattattggtactcatcaattagtaaacaaaaatgtaaag
tttaaagatttaggacttttgattgttgatgaagaacaaaaatttggggtagctgtaaaa
gaaaaacttaagacactcaaggataatgtagatgtattaaccttaacagcaacaccaata
cctcgaacacttcagtttagtttaatggcagcgcgagatttatcggttataacaacacca
ccgccaaatagatatcctattgagagtcatgttattcgttttaatgaagaaaccatccgt
gacgctgtgagttacgaaattgaacgtggagggcaaattttcttcattcataatcgtata
gaaaatattaaagaagttgcaggcatgattcaacgtttggttccagatgcgaaagttggt
gttggtcatgggcaaatggaaggcaagaaactagaacaattaatgttggcattcatggat
ggcgcttttgatgttttagtgagcacaaccattgtagaaagtgggttagatgtatctaat
gcaaatactatttttataaacaatgccaataattttggattaagcgatctacatcaaatg
cgtggtcgagtaggaagaagtaataaaaaagctttctgttattttataactccggaatat
tctgcaatgacagatgatgcacgaaaacgtatcacagctttagagcagtttacagaattg
ggtagcggtttcaatattgctatgaaagatttagaaattcgtggagctggcgatttattg
ggtggcgaacaaagtggttttataaatgaaattgggtttgatacctatcaaaaaatatta
aatgaagctatagaagaactcaaagagaatgagtttaaagatctatatgatgaagatgaa
gcggataaagtttatgtaaaagatgttactatagactctgattttgagctacttttccca
gatagttatgtgaataatattgcagaacgtttaaatttatacacacagctaaataattta
aaaacagaagcagaattaaatacttttgagaaagagttaattgatcgttttggagaatta
cctaaacaagtgaccgatttattaaatagtgtccaaataaagtggttagccactaaaata
ggcttcgaaaaaattattatgaaacaaggtaagttaatagggtattttattaacgatcag
caaagtcgtttttatcaaagttcaaatttcacaaaagtattacagtttgttcaatcacat
cctaatgcttgtaaaatgaaagaaaaacaaacccgaaatggtttgcgcttaatgcttacc
tttaacaatataaaatctgtaaaacaagcattaaatgctttacaacctattgtggcttaa
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