Saccharomonospora xinjiangensis: EYD13_17990
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Entry
EYD13_17990 CDS
T05928
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sacc
Saccharomonospora xinjiangensis
Pathway
sacc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sacc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EYD13_17990 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sacc03400
]
EYD13_17990 (mfd)
Enzymes [BR:
sacc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EYD13_17990 (mfd)
DNA repair and recombination proteins [BR:
sacc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EYD13_17990 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
RecG_dom3_C
DUF1474
Motif
Other DBs
NCBI-ProteinID:
QBQ61941
UniProt:
A0A4P7CFN0
LinkDB
All DBs
Position
complement(3893558..3897202)
Genome browser
AA seq
1214 aa
AA seq
DB search
MSPRRPGRGVSRVEGKNTSVTESPTGPLSGLLSALLSDPAVRGVVERAGAPLLDLDGPGA
AHQIVVSALAAERGAGRPVLAVTPTGRQAEELTASLASLLGPAAVADFPSWETLPHERLS
PRADTVGKRLEVLRRLASRGHGGLRVVVATVRSLIQPMAPGLGDLHPVQLRVGEESDFEA
VLERLVELAYTRVDMVEKRGEFAVRGGILDVFGPTAEHPHRVEFWGDEVSEIRAFAVADQ
RSLPGEVREIVAPPCREVLLTPDVKARAAELARAHEADAQLAEMLTKLADGIPCEGMEAL
IPVLCDGELELLTDAMPEGTHVVLADPEKIRARAADLVRTGQEFLEASWTSAADGGRAPI
DLGASAYRDLDEVRLHATDTKRCWWTLSQLTSEDEVHHVAVEAAFGYRGELDRVASDLRA
HTASGGAAVVVVAGAGTAKRAVEQLSGAEVPTTLATDGLTGEPKPGVVTVTCGGISDGFV
APGSGLVVLSEADITGRGATAGRARVDLNTKMPSRRRNAVDPIALKSGDYVVHEQHGIGR
FVEMVRRTVGGATREYLVLEYAPSKRGHPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGS
DWKKTKAKARKAVKEIAAELVQLYAARQAAPGHAFGADSPWQRELEDAFPFTETADQLAA
IDEVKRDMERGVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHLAT
FTERMRSFPVTIKGLSRFTDPGESEKVLNGLADGEVDIVIGTHRLLQSSVRYKDLGLVIV
DEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILT
YVGAYDDKQVAAAIRRELLRDGQVFYVHNRVSSIEKAAKRLRELVPEARVVTAHGQMNEH
RLEQIIQGFWEREFDVLVSTTIVETGLDISNANTLIVERGDLLGLAQLHQLRGRVGRGRE
RGYAYFLYPQERPLTETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGNILGAEQSGHIA
GVGFDLYVRLVGEAVDVFRKHAGAGAVEEEPTPAEVRVDLPVDAHIPHDYVPGERLRLEA
YRKIAAAPDTAELDAVRDELLDRYGRLPDPVERLLAVAAFRQVCREAGVTEVTVQGNNIR
FAPMKLADSQLVRLKRLYPKAVFKAVTSTVLVPRPTEGPAGGRIGAPVLRDEALLEWCTT
FIRSLTKQPAAVGA
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtccccacgccgcccgggcaggggtgtgtctcgtgttgaggggaagaacacgtccgtg
accgaatcacccaccggcccgctgtccgggctgctgtccgcactgctgtccgaccccgcg
gtgcggggtgttgtggagcgcgcgggtgccccgctgctcgatctcgacggccccggcgcg
gcccatcagatcgtggtgtccgcgctggccgcggaacggggcgcgggaaggcccgtgctc
gccgtgaccccgacgggacggcaggccgaggagctgacagcctcgctggccagcctgctc
ggccctgccgcggtcgccgacttcccttcgtgggagacgctgccacacgagcggctctcc
ccgagagcggacacggtcggcaagcggcttgaggtgctgcgcaggctggcaagccgtggc
cacggtggcttgcgggtggtcgtggccaccgtgcggagcctgatccagccgatggcgccc
ggcctcggggacctccaccccgtgcagttgcgagtcggggaggagagcgacttcgaggct
gtgctcgaacggctcgtcgagctcgcctacacccgcgttgacatggtggagaagcgcgga
gagttcgccgtgcgcggcgggattctcgacgtgttcgggcccacggcggagcacccgcac
cgcgtcgagttctggggcgacgaggtcagcgagatccgtgcgttcgccgtggctgaccag
cggtcgctgcccggtgaggtgcgggagatcgtcgccccgccgtgcagggaagtgctcctg
acccccgatgtgaaggcgagggccgccgagctggcgcgggctcacgaggcggacgcgcag
ttggcggagatgctcaccaaactcgccgacggcattccctgcgaggggatggaggcgctc
atccccgtgctgtgcgacggcgagctggagttgctcaccgacgccatgccggagggcacc
cacgtggtgctcgccgacccggagaagatccgcgccagagccgccgacctcgtgcgcacc
ggtcaggagttcctcgaagcgtcctggacgagtgcggccgacggtggccgcgcgcccatc
gacctcggcgcgtccgcctatcgcgacctcgacgaggtacggctgcacgccacggacacc
aagcggtgctggtggacgttgtcgcagctcaccagcgaggacgaggtgcaccacgtcgcc
gtcgaggccgctttcggctaccggggagagctcgaccgtgtggcgagcgacctgagggca
cacacggcgtcgggcggagccgccgtcgtggtggtcgcgggcgcgggcacggcgaaacgc
gccgtggagcagctctccggcgccgaggtccccaccacgctcgccaccgacggtctgacc
ggcgaaccgaaacccggcgtggtgacggtgacctgcggcggaatttccgacgggttcgtc
gccccgggaagcgggctcgtcgtactgagcgaggccgacatcaccggcaggggcgccacg
gcagggcgcgcgcgggtggacctgaacaccaagatgccgtcgcggcggcgcaacgccgtt
gacccgatcgcactcaagtcgggcgactacgtggtgcacgagcagcacggcatcggccgc
ttcgtcgagatggtccggcgcacggtaggcggtgcgacgcgcgagtacctcgtgctggag
tacgcgccgtctaagcgcggtcaccccggtgaccggcttttcgtgccgaccgatcagctc
gacgaggtgtcacgctacgtcggtggcgagttgccgacgctgaacaagctcggcggctcc
gactggaagaagaccaaggccaaggcacgcaaggcggtcaaggagatcgccgcggagctg
gtgcagctctacgccgcgcggcaggcggcgccgggacacgccttcggggccgactcgccg
tggcagcgggaactggaggacgccttcccgttcaccgagacggccgaccagctcgcggcc
atcgacgaggtcaagcgggacatggaacgcggagtgcccatggacagggtgatctgtggt
gacgtcggctacggcaagacggagatcgccgtgcgggccgcgttcaaggcggtgcaggac
ggcaagcaggtcgtggtcctcgtgccgaccaccctgctcgctcagcagcacctcgcgacg
ttcaccgagcgcatgcgctccttccccgtgacgatcaaggggttgtcgcggttcaccgat
cctggagagtccgagaaggtgctgaacgggctcgccgacggcgaggtggacatcgtcatc
ggcacccacaggttgttgcagtcgagcgtccgctacaaagacctcggtctggtcatcgtg
gacgaggaacagcggttcggtgtcgagcacaaggaacacatcaaggcgctgcgaacccac
gttgacgtgctgacgatgtcggcgacgccgatcccgcgcacgctggagatgagcatggcc
ggcatccgcgagatgtccaccatcctcaccccgccggaggaccggcacccgatcctcacc
tacgtcggcgcgtacgacgacaagcaggtcgctgcggccatccgcagggaactgctgcgc
gacggccaggtgttctacgtgcacaaccgcgtctcgtccatcgagaaggcggccaagcgc
ctccgtgaactggtgccggaggcgcgggtcgtgaccgcgcacgggcagatgaacgagcac
cgcctcgaacagatcatccagggcttctgggaacgtgagttcgacgtgctggtgagcacc
acgatcgtcgagacagggctggacatctcgaacgcgaacacgttgatcgtggagcgaggg
gatctgctcgggctcgcgcagctgcatcagcttcgcggcagggtggggcgtggccgcgaa
cgcgggtacgcgtacttcctctacccgcaggagaggccgttgacggagaccgctcacgac
cggctcgccaccatcgcgcagaacaccgagctcggcgcaggcatggccgtggcgatgaag
gacctggagatccggggcgcgggcaacatcctcggtgcggagcagtccgggcacatcgcg
ggagtcgggttcgacctctacgtccggctcgtcggcgaggcggtggacgtgttccgcaag
catgcgggcgcgggtgccgtcgaggaggaacccaccccggcggaggtccgggtcgacctg
ccggtggacgcgcacattccgcacgactacgtgccgggcgagcggctgcgccttgaggcg
taccgcaagatcgcagccgcgccggacacggcggagctggacgcggtgcgagacgaactt
ctcgaccgctacggccggttgcccgaccccgttgagcggctgctcgcggtggccgcgttc
cggcaggtgtgccgcgaggcaggcgtcaccgaggtcaccgtgcagggcaacaacatccgc
ttcgcgccgatgaagctggccgactcgcagctcgtgcggctgaagcggttgtacccgaaa
gcggtgttcaaggccgtcaccagcacggtgttggttccccggcccacggagggtcctgcc
ggtggccgcatcggcgctccggtgttgcgggacgaggctctgctggagtggtgcaccacg
ttcatccgttcgctgacgaagcagcctgccgctgtgggtgcctga
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