KEGG   Sulfodiicoccus acidiphilus: HS1genome_0893
Entry
HS1genome_0893    CDS       T05813                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sacd  Sulfodiicoccus acidiphilus
Pathway
sacd03030  DNA replication
sacd03410  Base excision repair
sacd03420  Nucleotide excision repair
sacd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sacd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HS1genome_0893
   03410 Base excision repair
    HS1genome_0893
   03420 Nucleotide excision repair
    HS1genome_0893
   03430 Mismatch repair
    HS1genome_0893
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sacd03032]
    HS1genome_0893
   03400 DNA repair and recombination proteins [BR:sacd03400]
    HS1genome_0893
Enzymes [BR:sacd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HS1genome_0893
    6.5.1.6  DNA ligase (ATP or NAD+)
     HS1genome_0893
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     HS1genome_0893
DNA replication proteins [BR:sacd03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    HS1genome_0893
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     HS1genome_0893
DNA repair and recombination proteins [BR:sacd03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     HS1genome_0893
   NER (nucleotide excision repair)
    Other NER factors
     HS1genome_0893
   MMR (mismatch excision repair)
    Other MMR factors
     HS1genome_0893
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: BBD72504
UniProt: A0A348B2V2
LinkDB
Position
854131..855924
AA seq 597 aa
MKFGMVAEYFAKLEDISSRLQLSATLAELFRSADKAVLDKVVYLIQGKLWPDFLGMPEIG
VGEKLLIKAVALGTGRNEGEVESVLRKMGDLGEVAASLKGGNKMDSLTAFLGTRDEGELT
VEEVHEKLAKVALASGERSRDIKVRTLAGLVKRATPIEAKYIVRFVDGKLRLGIGDATIL
DALSQAFGGSKADVERAYNLRADLGQIAKLLAEGGAEAISSVRVTVGIPVRVMLAERLSE
AGEIMEKVGGKALVDYKYDGERAQIHRKGQTVTVFSRRMENITSQYPDVVQWVRDYLKAE
ELICEGEIVAVDPATGDMRPFQELMHRKRKADVLEATKEYPVNLFLFDLLYLEGEDFTTK
NQLERRRKLEELVSQEQDKVKVAQSMIVEDRAKLEEFFFRAISDGAEGVMVKSISPDSIY
QAGARGWLWIKLKRDYKSEMADTVDLVVVGAIYGRGKRGGKFSSLLLAAYDEETDTFKTV
CKVASGFSDQELDQMQELVRKHAIPHRHPRVESSIEADVWVEPSLVMEVRGAELTLSPLH
TCCLNSYREGMGISIRFPRFIRWREDKSPDDATTSKEILEMYRNRLKKVEVEGDESV
NT seq 1794 nt   +upstreamnt  +downstreamnt
atgaagttcgggatggtggcggagtacttcgcaaagctcgaagacatttcatcaagactg
cagcttagcgccactctagcggagttgttcaggtccgccgacaaggccgtactagataag
gtagtgtacttaatccagggaaaactgtggcctgacttccttgggatgccggaaatcggg
gttggggagaaactgttgataaaggcggttgcactaggtacaggaagaaatgaaggagag
gtggaatctgtcctcagaaaaatgggagacttgggagaggtcgcggccagcctcaaggga
ggcaataagatggatagtctgactgctttcctagggactagagacgaaggtgagctcaca
gttgaagaagtccacgagaaattggccaaagtggcacttgctagcggagaaagaagcagg
gacatcaaggtgaggacattagctggactagtaaaaagggccaccccgatcgaggccaag
tatattgtgcggttcgttgatggaaagctaaggctagggataggagacgccaccatcttg
gacgctctgtctcaggcattcggcgggtctaaagccgacgtggagagggcctataacttg
agggcggaccttgggcagatagctaagttgttggccgaaggtggagcggaggccatctcg
tcggtaagagtaacggtaggtattccagttcgtgtgatgcttgcagagagactctcggaa
gcaggggagataatggaaaaggtgggaggtaaagcgttagtggactacaagtacgacggt
gaacgagcgcaaatacacagaaagggacaaactgtcaccgttttctcaaggaggatggaa
aacatcacttcgcaatacccagacgtggtgcagtgggtcagggactaccttaaagcagag
gaactgatatgtgagggagaaatcgtggctgtagatccagccacaggcgacatgagaccc
ttccaagaactcatgcataggaagaggaaggcggatgtgttggaggctactaaggaatac
cctgtcaacctcttcttgttcgatctcctctacctcgaaggggaagacttcactactaag
aaccagctagagaggagaaggaagttggaggagttagtgtcgcaggaacaagacaaggtc
aaggtagctcagagtatgatcgtggaagatagggctaagttggaggagttcttcttcagg
gccatatcagatggcgcggagggagtcatggttaagtccatttctccagactcaatttat
caggcgggggcgaggggttggctctggataaagctgaagagagattacaagagtgagatg
gctgacactgtcgacttagtagtggtgggagcgatttacggaagaggtaagaggggagga
aaattcagctcgctcctactcgcggcctacgacgaggaaaccgatactttcaagacggta
tgcaaggtcgcctcaggattttccgaccaagaactggaccaaatgcaggagttggtgaga
aaacatgcgatcccccatagacaccccagggtcgagtcgtcaattgaggcagacgtatgg
gttgagccttccctggttatggaagtgagaggagctgagttgacgctctccccactgcac
acttgctgtcttaactcgtatagggaagggatggggatctcaatcaggttccctaggttc
ataaggtggagggaagacaagtccccagacgacgcaactacttcgaaggaaatactggaa
atgtacaggaacagattgaagaaggtcgaggtcgagggagacgagtcggtttga

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