Shewanella acanthi: K0H61_00735
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Entry
K0H61_00735 CDS
T09152
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sach
Shewanella acanthi
Pathway
sach03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sach00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K0H61_00735 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sach03021
]
K0H61_00735 (rpoC)
03400 DNA repair and recombination proteins [BR:
sach03400
]
K0H61_00735 (rpoC)
Enzymes [BR:
sach01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K0H61_00735 (rpoC)
Transcription machinery [BR:
sach03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K0H61_00735 (rpoC)
DNA repair and recombination proteins [BR:
sach03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K0H61_00735 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
gerPA
Motif
Other DBs
NCBI-ProteinID:
QYJ79013
LinkDB
All DBs
Position
162469..166686
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM
GAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFYTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYATG
AAELHARVKVRITETIIGDDGERTEQRRIVDTTVGRALLSLILPAGLSFDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRFATISGASVGIDDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVAVDVLYPGTEDVLAPRNTLLDEAWCDKLEENSIDEVIVRSVITCDTDFGVCAACYG
RDLARGHLINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKNTGSLKL
HNAKHVTNSDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEDATVESGEIIANW
DPHTHPIISEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGSAGKEMRPMIRL
VGADGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGDQYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCVITSAGDTEFLEGEQVEVSRVKIANRELIEQGKVPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTRNDARAKKDEPV
VVNKITASEAEQNLADLLNLAGGEE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttaacggcatc
aaaattggtctggcatcgcctgatctgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccattaactaccgtaccttcaagcctgagcgtgaaggtctgttctgtgcgcgt
atctttggcccagtcaaagattacgaatgtttgtgcggtaagtacaagcgtttgaagcac
cgtggtgtgatctgtgaaaagtgtggtgtagaagttacccagactaaagtacgtcgtgag
cgtatgggtcacatcgaactggcaagtccagttgcccacatttggttcttgaaatcactg
ccgtcccgtatcggtttaatgctggatatgacgctgcgtgatatcgagcgcgtactgtat
tttgaatctttcgtcgtgatcgagcctggcatgaccagccttgagcgtggccaaatgctg
acagaagaaaactatctagacgcattagaagaatacggtgacgaattcgaagccaagatg
ggtgctgaagcggtattagaactgctgcgcgcaatcgatctcgaaaaagaaatcgaacaa
atgcgtgaagagctgccatcaatcaactctgagacccgtcgcaagaaagtgaccaagcgt
ctgaagttgatggaagcgttctacacctctggcaacaagccagagtggatgatcttaaaa
gtactgccagtgttgccacctgacttacgtccgctggtaccgctcgatggcggccgcttt
gcgacttcagatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtttgaag
cgtctgttagatttagctgcgccggacatcatcgtacgcaacgaaaagcgtatgttacaa
gagtctgttgatgcgctattagataacggtcgtcgtggccgtgctatcacaggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaaacaaggtcgtttccgtcag
aacttgttaggtaagcgtgttgactactcaggtcgttcggtaattaccgtaggtcctact
ttacgtctgcaccaatgtggtcttcctaagaagatggcactggaactgttcaagccattc
atctatggcaagctggaaggtcgtggcttagcgacaaccatcaaagctgctaagaagatg
gtagagcgtgaagtggcggaagtttgggacgtactggatgaagtgatccgcgaacatcca
gtgatgcttaaccgtgcaccaacacttcacagactgggtatccaagccttcgaacccgta
ctgattgaaggtaaagcaatccagttacacccactcgtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggcggtacacgtaccgttaacactggaagcgcagcttgaagcc
cgtgccctgatgatgtctaccaacaacatcctgtcaccagcgaacggcgagccagtaatc
actccgtctcaagacgtggtattaggtctgtactacaccagccgtgagcgtatcaacggc
cgtggtgaaggtatgtactttatgtctgttgctgaagttgaaaaagcttacgcaactggc
gcagctgaactgcatgcccgtgtgaaagtacgcatcactgaaaccattattggtgacgat
ggtgaacgtactgaacaacgtcgtatcgtagatacaactgtgggtcgtgctctgctgtca
cttattctgccagcaggtttgtcatttgatctggttaaccagaacatgggcaaaaagcag
atttctaaactgttgaacacttgttaccgtcaattaggtctgaaagatactgttatcttc
gctgaccaactgatgtacaccggtttccgtttcgcgactatctctggtgcctctgtcggt
attgacgacatggttattccagatgagaagtacaccttagttgctgacgctgaagcagaa
gtgctcgagattcaagagcagttccaatcaggtctggtaaccgcgggtgagcgttacaac
aaagttatcgacatctgggcaagtgcgaacgaaaaagtttctaaagcgatgatggaaaac
ctgtcaacagagacagtgattaaccgtgatggcgttgaagagaaacaagcttcgttcaac
agcatttacatgatggccgactcgggcgctcgtggtagtgccgcacagatccgtcagtta
gcgggtatgcgtggtctgatggcgaagccagacggttcgatcatcgaaaccccaatcgtg
gcgaacttccgtgaaggtctgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtctagccgataccgcattgaagacagcgaactcgggttacctgactcgtcgtctg
gttgacgttgctcaagatttagtcgtgattgaagacgattgtggtacccacgaaggtcta
acaatgaagccgctaattgaaggtggtgacgttgttgagccattacgtgaacgcgtactg
ggtcgtgtggttgcagttgacgttctgtacccaggtacagaagacgtactggctccacgt
aacacgctgctcgatgaagcatggtgtgacaagttagaagaaaactcgatcgacgaagtg
attgttcgttcagtaattacctgtgataccgacttcggtgtgtgtgcggcatgttatggc
cgtgacttagcccgtggtcacctgattaaccacggcgaagccatcggtgttgtcgcggct
caatcaatcggtgaaccaggtacacagttaacgatgcgtacattccacattggtggtgcg
gcatctcgtgcatctgcagaaaacagtgttcaagtgaagaacaccggttcgctgaaattg
cacaacgcgaaacacgttactaacagtgacggtaagctagttatcgtttctcgttcatca
gaactggcaatcatcgacgaattaggtcgtgagaaagagcgttataaagtgccttacggt
actgtgctcgagaagctggaagatgcaacagtagaatctggcgaaattatcgcaaactgg
gatccacatactcacccaatcatttctgaagtggcgggtagtatcaagttcgtagacatg
attgacggtgtgactatgacacgtcaaacagacgaactgacgggtctgtcatcaattgtg
atccttgacgtaggtcaacgtggttcagcgggtaaagaaatgcgcccgatgatccgtctt
gttggcgctgatggtagcgacttgatgatcccaggtacagaagtgccagcacagtacttc
ttaccaggcagtgcgatcgttaacctcgacgacaatgcacaaatcaacgtgggtgacgcg
ttagcacgtattccgcaagaatcgtctaaaacacgcgacatcaccggtggtcttccacgt
gttgctgacttgttcgaagcccgtaagccaaaagagccagccattctggcggaaatctcg
ggtaccatctcgtttggtaaagagactaaaggcaagcgtcgtctggtaattactccagcg
gatggtggcgatcaatacgaagagatgatcccgaaatggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttatcgctgacggtccagaagcggctcacgacatt
ctgcgtctacgtggtatccacaacgtagccaactacatcgtgaacgaagttcaggacgtt
taccgcttacagggcgtgaagatcaacgataagcatatcgaagtgatcatccgtcaaatg
ctgcgtaagtgcgtgatcacctctgcaggtgacactgagttcttagaaggcgagcaagta
gaagtgtctcgcgttaagatcgcaaaccgcgaacttatcgagcaaggcaaagtacctgcg
accttcgaacgtgaactgttgggtattactaaagcgtctctggcaacagaatcgtttatc
tctgcagcctcgttccaagaaacgactcgcgtactgactgaagctgctgtaggtggtaag
tctgataacttacgtggtctgaaagagaacgtaatcgttggccgtctgatcccagccggt
actggttatgcgtatcacaagacccgtaacgatgcccgtgctaagaaagacgagccagtt
gtagtgaataagatcactgcaagtgaagcagaacagaaccttgcagacctcttaaacttg
gccggtggcgaagaataa
DBGET
integrated database retrieval system
