Streptomyces actuosus: DMT42_16405
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Entry
DMT42_16405 CDS
T08084
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sact
Streptomyces actuosus
Pathway
sact03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sact00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DMT42_16405 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sact03400
]
DMT42_16405 (mfd)
Enzymes [BR:
sact01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DMT42_16405 (mfd)
DNA repair and recombination proteins [BR:
sact03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DMT42_16405 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
AAA_22
RecG_dom3_C
DUF6099
Motif
Other DBs
NCBI-ProteinID:
AWT43742
UniProt:
A0A2U9P2J1
LinkDB
All DBs
Position
complement(3498298..3501831)
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AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDPALAEAITAAADGNRMHVDLVGPPAARAFGIAALAARSGRPVLAVTA
TGREAEDLAAALRSLLPSEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVSLRTGQSADLNTVVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEIAEHGLWAPPCRELL
LTDDVRARARALAEDHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRASDLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELGMM
WWSVSPFAADALEEADTLKLGMHAPETYRGDTARALADTKGWLADGWRTVYVTEAHGPAA
RTVEVLGGEGIAARLDADLGEISPSVVHVACGSIEHGFVDPALRIAVLTETDLSGQRAAG
RDGARMPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFAPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKTVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVTVKALSRFQTDTEAKA
VLEGLREGTVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEERQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSEAALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGE
IEEEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDIKAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRLKRLYPGSVIKPAT
HQVLVPRPKTAKVGGKPLVGRELLGWVGEFLASVLGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtagtcaaggaccccgccctcgcggaagcgatc
acggcggccgcggacggcaaccgcatgcacgtcgacctggtcggcccacccgccgcccgc
gccttcggcatcgccgcgctggcggcacgcagcggccgccccgtgctcgcggtcaccgcc
accggccgcgaggccgaggacctcgccgcggccctgcgctccctgctgccctccgagggc
gtcgtggagtacccctcctgggagaccctcccgcacgagcgcctcagcccccgcagcgac
accgtcggccgccgcctcgccgtcctgcgccgcctggctcacccccgccccgacgacccc
gagaccggcccggtctccgtcgtcgtcgcgcccgtccgctcggtgctccagccgcaggtc
aagggtctgggcgacctggagccggtgtccctgcgcaccggccagagcgccgacctgaac
acggtcgtcgaggccctcgccgcggcggcgtacgcgcgcgtggagctggtggagaagcgc
ggcgagttcgccgtacgcggcggcatcctcgacgtgttcccgcccaccgaggaacacccc
ctgcgcgtcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggagatcgccgagcacggcctgtgggcgccgccctgccgcgagctgctg
ctcaccgacgacgtccgcgcccgcgcgcgtgccctcgccgaggaccaccccgagctgggc
gaactgctcggcaagatcgccgagggcatcgccgtggagggcatggagtccctcgccccg
gtcctcgtcgacgacatggagctgctgctcgacgtcctgcccaagggcgccatggccgtc
gtgtgcgacccggagcgggtccgcacgcgcgcgtccgacctcgtcgcgaccagccaggag
ttcctccaggcctcctgggcggccaccgccggcggcggcgaggccccgatcgacgtcggc
gccgcctccctgtggtccatcgccgacgtccgcgaccgggcgcgcgagctgggcatgatg
tggtggtcggtgtcgccgttcgcggccgacgcgctggaggaggccgacaccctcaagctg
ggcatgcacgccccggagacctaccgcggcgacaccgcccgcgcgctcgccgacaccaag
ggctggctcgccgacggctggcgcacggtgtacgtcaccgaggcccacggcccggccgcc
cgcaccgtggaggtcctcggcggggagggcatcgcggcccgcctcgacgccgacctcggc
gagatcagcccgtccgtggtgcacgtcgcctgcggctccatcgagcacggcttcgtcgac
ccggcgctcaggatcgccgtcctcaccgagaccgacctgtcgggacagcgggccgccggc
cgcgacggcgcgcgcatgcccgcccgccgccgcaagacgatcgacccgctcaccctggag
gccggcgactacatcgtccacgagcagcacggcgtcggccgctacatcgagatggtgcag
cgcaccgtgcagggcgccacccgcgagtacctggtcgtggagtacgcgcccgccaagcgc
ggccagcccggcgaccgcctgtacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcgcccacgctgcaccggctcggcggcgcggactggacgaagaccaag
gcgcgcgcgaagaaggccgtcaaggagatcgccgccgacctgatcaagctgtacagcgcg
cgcatggccgcgcccggccacgccttcgccccggacacgccctggcagcgcgagctggag
gacgccttcccgtacgcggagacccccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagacggtccccatggaccgcctgatctgcggcgacgtcgggtacggcaag
acggagatcgcggtgcgggccgcgttcaaggccgtccaggacggcaagcaggtcgccgtg
ctcgtcccgacgacgctgctggtgcagcagcacttcggcacgttcagcgagcggtacgcg
cagttcccggtcaccgtgaaggcgctctcccgcttccagaccgacaccgaggccaaggcg
gtcctggagggcctgcgcgagggcacggtggacgtggtcatcggcacgcaccgcctgttc
tcctcggagaccaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtggagcacaaggagcagctgaagaagctgcgcgccaacgtggacgtgctcaccatg
tccgccacgcccatcccgcggaccctggagatggcggtcaccggcatccgcgagatgtcg
acgatcaccacgccgccggaggaacggcacccggtgctgaccttcgtcgggccgtacgag
gagcggcagatcggcgccgccatccgccgtgagctgctgcgcgagggccaggtcttctac
atccacaaccgggtcgagtccatcgaccgggccgccgcccggctgcgcgagatcgtcccc
gaggcgcgcatcgccaccgcccacggccagatgtcggaggcggcgctggagcaggtcgtc
gtcgacttctgggagaagaagttcgacgtgctggtctcgacgacgatcgtcgagtccggc
atcgacatctccaacgccaacaccctgatcgtcgagcgcggcgacaccttcggcctgtcc
cagctgcaccagctgcgcggccgcgtcggccggggccgcgagcgcgggtacgcgtacttc
ctgtacccgccggagaagcccctgacggagaccgcgcacgagcgcctggcgacgatcgcc
cagcacaccgagatgggcgcgggcatgtacgtcgcgatgaaggacctggagatccgcggc
gcgggcaacctcctcggcggcgagcagtccggccacatcgcgggcgtcggcttcgacctg
tacgtccgtatggtcggcgaggcggtggccgactaccgccgccagctggagacgggcgag
atcgaggaggaggccccgctggaggtcaagatcgagctgccggtcgacgcgcacgtcccg
cacgactacgcgcccggcgagcgcctgcgcctgcaggcgtaccgcgcgatcgcctccgcc
aacagcgaggaggacatcaaggccgtccgcgaggaactcaccgaccgctacggcaagctg
cccgagccggtggagaacctgctgctggtggcgggcctgcgcatgctcgcgcgggcgtgc
ggcgtcggcgagatcgtcctgcagggcaccaacatccgcttcgcgccggtggagctgcgc
gagtcgcaggaactccggctcaagcgcctctacccgggcagcgtcatcaagccggccacc
caccaggtcctggtgccccgcccgaagacggccaaggtcggcggcaagccgctggtcggc
cgggaactgctgggctgggtcggcgagttcctggcgtcggtgctgggctcgtag
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