Streptomyces actuosus: DMT42_31355
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Entry
DMT42_31355 CDS
T08084
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sact
Streptomyces actuosus
Pathway
sact03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sact00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DMT42_31355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sact03400
]
DMT42_31355
Enzymes [BR:
sact01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DMT42_31355
DNA repair and recombination proteins [BR:
sact03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DMT42_31355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AWT46352
UniProt:
A0A2U9P9W4
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All DBs
Position
6823995..6824921
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AA seq
308 aa
AA seq
DB search
MSRGGARTVRAGRRTVEVHRPDKVLFPGGADTKEYTKGDLVDYYRSVAPFMLPHLRGRPL
MLERHPDGVDGPRFMQKNTPEHYPDWITRAELPKEDGTVCHTVCDDTATLVYLADQACLT
FHRWLSRTGSPTRPDRLVFDLDPADDDFAAVREAARRLGDLLDQLRLPSALMTTGSRGLH
VIVPLDGRDEVDAVREFARDVADLLVAEHPDRFTTAARKKDRGDRLYLDVQRNGYAQTAV
APYTVRARPGAPVAVPIAWEQLDDPDLGPRRWTLADAVEHARTDPWAAVSGRGRALGPAR
RRLDALRG
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
gtgagccgtggcggcgcgcgcacggtgcgggccgggcgccgtaccgtcgaggtccaccgg
ccggacaaggtgctcttccccggcggcgcggacaccaaggagtacaccaagggcgacctg
gtcgactactaccggtcggtcgcccccttcatgctgccgcacctgcgcggccgtccgctg
atgctggagcggcaccccgacggcgtcgacgggccgcgcttcatgcagaagaacaccccc
gagcactacccggactggatcacccgcgccgagctgcccaaggaggacggcaccgtctgc
cacaccgtgtgcgacgacaccgccaccctggtctacctcgccgaccaggcctgcctcacc
ttccaccgctggctctcccgcaccggcagccccacccgccccgaccggctggtcttcgac
ctcgaccccgcggacgacgacttcgcggccgtccgcgaggcggcccgccggctcggcgac
ctgctggaccagctccggctgccctcggcgctgatgaccaccggctcgcgcggactgcac
gtgatcgtgccgctcgacggccgggacgaggtcgacgcggtacgggagttcgcccgggac
gtggccgacctgctcgtcgccgaacaccccgaccggttcaccaccgccgcccgcaagaag
gaccgcggcgaccggctctatctcgacgtgcagcgcaacggctacgcccagaccgcggtc
gccccttacaccgtacgggccaggcccggtgcgcccgtcgccgtaccgatcgcctgggag
cagctggacgacccggacctcggtccgcgccgctggaccctcgccgacgccgttgagcac
gcccgcaccgacccgtgggccgcggtgagcggccgggggcgggcgctcggcccggcgcgg
cggcggctggacgcgctgcggggatga
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