Stenotrophomonas acidaminiphila: AOT14_11930
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Entry
AOT14_11930 CDS
T04107
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sacz
Stenotrophomonas acidaminiphila
Pathway
sacz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sacz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AOT14_11930 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sacz03400
]
AOT14_11930 (mfd)
Enzymes [BR:
sacz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AOT14_11930 (mfd)
DNA repair and recombination proteins [BR:
sacz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AOT14_11930 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
UB2H
RecG_dom3_C
AAA_30
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ALJ27604
UniProt:
A0A0S1AXX1
LinkDB
All DBs
Position
complement(1342959..1346429)
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AA seq
1156 aa
AA seq
DB search
MPHHASYPVPPLPRTGQLRAWWRAPASTSALAWYVARAAQAHAGPLLLVTRDNHGAHQAV
ADLQTLLGDDATLPVVPFPDWETLPYDQFSPHPDIISQRLAALHRLPGLAHGIVVVPVQT
LLQRLAPLSYIVGGSFDLQVGQRLDMDVEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVY
PMGADAPLRIELLDEDIDSIREFDPESQRSLDKVAAVKMLPGREVPMDEASLAKVLATLR
ERFDVDTRRSPLYQDLKAGVLPSGIEYFLPLFFERTATLFDYLPAGFLTVVAPGVGEAAD
AFWAQTGSRYEQRRHDIERPLLPPEEIYQSPDSLREQFNRLPRVDVWPAGHPRIAEAQAL
GDQPLPPLPVAAKDVPAGQALKSFLDHYPGRVLIAADSPGRREALLEVLQAADLRPPVVP
GLPAFLAADAPRFAITVAPLDDGFALAEPPLAVLTERQLFPERAGQPRRSRRAGREPEAI
IRDLGELTEGAPIVHEDHGVGRYRGLIAMDVGGMPGEFLEIEYAKGDRLYVPVAQLHLIS
RYSGASPETAPLHSLGGEQWAKAKRKAAEKVRDVAAELLEIQARRQARAGLALDIDRAMY
EPFAAGFPFEETPDQLAAIEATLRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASGGK
QVAVLVPTTLLAEQHYRNFRDRFADYPLKVEVLSRFKSTKEIKAELDKVADGSIDVIVGT
HRLLQPDVKFKDLGLVIVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGL
RDLSIIATPPPNRLAVQTFVTQWDNAQLREAFQRELARGGQLYFLHNDVESMGRMQRELS
ELVPEARIGMAHGQMPERELEKVMLDFQKQRFNVLLASTIIESGIDIPNANTIIINRADR
FGLAQLHQLRGRVGRSHHRAYAYLVVPDKRSITPDAQKRLDAIASMDELGAGFTLATHDL
EIRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRSGKLPDLDAGEEARGAEVELHVP
ALIPEDYLPDVHTRLTLYKRISSARDSAALRELQVEMIDRFGLLPDPVKHLFAIAELKLQ
ANALGIRKLELGENGGRIVFEAKPDIDPMAVIQLIQKQPRLYQMDGPDKLRIRHPLPEGA
DRFNAARALLATLRPG
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccgcatcacgcctcctaccccgttccgccgctgccccgcacgggccagctccgcgcc
tggtggcgcgcccccgcatcgaccagcgcgctggcctggtacgtggcccgcgccgcgcag
gcccatgccgggccgttgctgctggtcacccgcgacaaccacggcgcgcaccaggccgtc
gccgacctgcagaccctgctcggcgacgacgcaacgctgccggtggtgccgttcccggac
tgggaaaccctgccctacgaccagttcagtccgcacccagacatcatttcccagcgcctg
gccgcgctgcaccgcctgcccgggctcgcccacggcatcgtggtggtgccggtacagacc
ctgctgcaacggctggcgccactgagctacatcgtcggcggcagcttcgacctgcaggtc
ggccagcgcctggacatggacgtggagaagcgccgcctggaaagcgccggctaccgcaac
gtgccgcaggtcatggacccgggcgatttcgccgtgcgcggcggcctgctcgatgtctac
ccgatgggtgccgacgcgccgctgcgcatcgagctgctggacgaggacatcgactcgatc
cgcgagttcgaccccgaatcgcagcgctcgctggacaaggtcgccgcggtgaagatgctg
cccggccgcgaagtgccgatggacgaggccagcctggcgaaggtactggccacgctgcgc
gagcgcttcgacgtggacacgcgccgcagcccgctctaccaggacctcaaggccggggtg
ctgccctcgggcatcgagtacttcctgccgctgttcttcgagcgcaccgcgaccctgttc
gactacctgccggccggcttcctgaccgtggtcgcgcccggcgtgggcgaagccgccgat
gcgttctgggcacagaccggcagccgctacgaacagcgccgccacgacatcgaacggccg
ctgctgccgccggaggagatctaccagtcgccggacagcctgcgcgagcagttcaaccgg
ctgccgcgggtggacgtgtggccggccgggcacccgcgcatcgccgaggcgcaggcgctg
ggcgaccagccgctgccgccgttgccggtcgcggccaaggacgtgccagccgggcaggcg
ctgaagtccttcctcgaccattatcccggccgggtgctgattgcggccgattcgccgggc
cgccgcgaggcgctgctggaagtgctgcaggccgccgacctgcggccgccggtggtgccg
gggctgccggcgttcctggccgccgacgcaccacgcttcgccatcaccgtggcaccgctg
gacgacggcttcgccctggccgagccgccgctggcggtgctcaccgagcgccagctgttc
cccgaacgcgccggccagccgcgccgcagccgccgtgccgggcgcgagccggaggcgatc
atccgcgacctcggcgagctgaccgaaggcgcgcccatcgtccacgaggaccacggcgtc
ggccgctaccgcgggctgatcgcgatggacgtcggcggcatgcccggcgaattcctggag
atcgagtacgccaagggcgaccgcctgtacgtgccggtcgcgcagctgcacctgatcagc
cgctactcgggcgcctcgccggaaaccgcgccgctgcactcgctcggcggcgagcagtgg
gccaaggccaagcgcaaggccgccgagaaggtgcgcgacgtcgccgccgaactgctggaa
atccaggcccggcgccaggcccgtgccggtctggcgctggacatcgaccgcgccatgtac
gaaccgttcgccgccggcttcccgttcgaggaaacgccggaccagctggccgcgatcgaa
gccaccctgcgcgacctgcagtcgtcgcagccgatggaccgcgtggtctgcggcgacgtc
ggcttcggcaagaccgaggtggcggtgcgcgccgccttcgccgccgccagcggcggcaag
caggtggcggtgctggtgcccaccacgctgctggccgagcagcactaccgcaacttccgc
gaccgcttcgccgactatccgctcaaggtcgaagtgctgtcgcgcttcaagtccaccaag
gagatcaaggccgagctggacaaggtggccgacggcagcatcgacgtgatcgtcggcacc
caccgcctgctgcagccggacgtgaagttcaaggacctgggcctggtcatcgtcgacgag
gaacagcgcttcggcgtgcgccagaaggaagcgctcaaggccatgcgcgccaacgtgcac
ctgctcacgctcaccgccacgccgatcccgcgcacgctgaacatggccatggccgggctg
cgcgacctgtcgatcatcgccaccccgccgccgaaccggctggcggtgcagaccttcgtc
acccagtgggacaacgcgcagctgcgcgaggcattccagcgcgaactcgcgcgcggcggc
cagctgtatttcctgcacaacgacgtggaaagcatgggccggatgcagcgcgagctgtcc
gaactggtgcccgaggcgcgcatcggcatggcccatggccagatgcccgagcgcgagctg
gaaaaggtgatgctggacttccagaagcagcgcttcaacgtgctgctggccagcaccatc
atcgagtcgggcatcgacatccccaacgccaacaccatcatcatcaaccgcgccgaccgc
ttcggcctggcccagctgcaccagctgcgcggccgcgtcggccgctcgcaccaccgcgcc
tatgcgtacctggtggtgccggacaagcgctcgatcacccccgatgcgcagaagcggctg
gatgccatcgcctcgatggacgaactcggcgccggcttcaccctggccacccacgacctg
gagatccgcggtgccggcgaactgctcggcgaggaccagagcgggcagatggccgaggtc
ggcttcagcctctacaccgaactgctggagcgggcggtgcgctcgatcaggtccggcaag
ctgcccgacctggacgccggcgaggaagcgcgcggcgccgaggtcgaactgcacgtgccg
gcgctgatcccggaggactacctgcccgacgtgcatacgcgcctgaccctgtacaagcgc
atttccagcgcgcgcgacagcgccgccctgcgcgaactgcaggtggagatgatcgaccgc
ttcggcctgctgccggatccggtcaagcacctgttcgccatcgccgagctcaagctgcag
gccaacgcgctgggcatccgcaaactggaactgggcgagaacggcggccgcatcgtgttc
gaggccaagcccgacatcgacccgatggcggtgatccagctgatccagaagcaacccagg
ctctaccagatggacggcccggacaagctgcgcatccgccacccgttgccggaaggcgcg
gaccgcttcaacgccgcccgcgcactgctggccaccctgcgcccggggtga
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