Stenotrophomonas acidaminiphila: AOT14_13960
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Entry
AOT14_13960 CDS
T04107
Symbol
rimO_1
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase
KO
K06168
tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:
2.8.4.3
]
Organism
sacz
Stenotrophomonas acidaminiphila
Brite
KEGG Orthology (KO) [BR:
sacz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sacz03016
]
AOT14_13960 (rimO_1)
Enzymes [BR:
sacz01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.3 tRNA-2-methylthio-N6-dimethylallyladenosine synthase
AOT14_13960 (rimO_1)
Transfer RNA biogenesis [BR:
sacz03016
]
Prokaryotic type
tRNA modification factors
Methylthiotransferases
AOT14_13960 (rimO_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TRAM_2
B12-binding
Motif
Other DBs
NCBI-ProteinID:
ALJ27799
UniProt:
A0A0S1AYC5
LinkDB
All DBs
Position
complement(1571624..1573081)
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AA seq
485 aa
AA seq
DB search
MPGTPASPLPNVAVSAMPSVEMNTPELIPLPGRGRDAAARSPARGKLYIKTHGCQMNEYD
SAKMADVLAEAEGLELTDNPEEADVVLVNTCSIREKAQEKVFSQLGRWKELKAGGRDVII
GVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARREQNRPQVDISFPEIEKFDR
LPEPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGTEVSRPFEDVVIECAQLAAQGVREINL
LGQNVNAYRGPYGDGELADLGLLIRTIAEIDGIGRIRFTTSHPLEFSDSLVDAYRDVPKL
ANYLHLPVQAGSDRVLSAMKRGYTALEFKARIRKLRAVRPDISISSDFIVGFPGETEADF
EKTMKLIEDVGFDQSFSFIYSRRPGTPAADLEDTTSEAEKHARLSRLQAHINAYAAGISR
NMVGSVQTVLVEGTSRKDDNELTGKTENMRSVNFPGPKRLIGQFVDVVITEALTNSLRGR
IVTAG
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggacgccagcctcccccctgccgaacgtggcggtttccgccatgccttccgtc
gaaatgaatacccccgaactgatccccctgcccgggcgcggacgcgacgccgctgcccgc
tcgccggcgcgtggcaagctctatatcaagacccatggttgccagatgaacgagtacgac
tcggccaagatggccgacgtgctggccgaagccgagggcctggagctgaccgacaacccc
gaggaggcggacgtggtgctggtcaacacctgctccatccgcgagaaggcgcaggagaag
gtgttcagccagctcggccgctggaaggagctcaaggccggcggccgcgacgtcatcatc
ggcgtcggcggctgcgtggcgtcgcaggagggcgaggccatcgtcaagcgcgcgccctac
gtggacctggtgttcgggccacagaccctgcaccggctgccggaactgatccgtgcccgc
cgcgagcagaaccggccgcaggtggacatcagcttccccgagatcgagaagttcgaccgc
ctgcccgagccgcgcgccgaaggcccgtccgcattcgtgtcgatcatggaaggctgttcc
aagtactgctcgttctgcgtggtgccctatacccgcggcaccgaggtcagccgcccgttc
gaggacgtggtgatcgaatgcgcgcagctggccgcgcagggcgtgcgcgagatcaacctg
ctcgggcagaacgtcaacgcctaccgcggcccgtatggcgacggggagctggcggacctg
ggcctgctgatccgcaccatcgccgagatcgacggcatcggccgcatccgtttcaccacc
tcgcacccgctggagttcagcgattcgctggtggacgcctaccgcgacgtgcccaagctg
gccaactacctgcacctgccggtgcaggccggcagcgaccgcgtgctcagcgccatgaag
cgcggctacaccgccctcgagttcaaggccaggatccgcaagctgcgcgcggtgcgcccg
gacatctcgatcagctcggacttcatcgtcggctttcccggcgagaccgaggccgatttc
gagaagaccatgaagctgatcgaggacgtgggcttcgaccagagtttttccttcatctac
tcgcgccgccccggcacgccggccgccgacctggaggacaccacgtccgaggccgagaag
cacgcgcgcctgtcgcgcctgcaggcgcacatcaacgcatatgccgccggcatctccagg
aacatggtcggcagcgtgcagaccgtgctggtcgaaggcacctcgcgcaaggacgacaac
gagctgaccggcaagaccgagaacatgcgttcggtgaacttcccgggcccgaagcggctg
atcggccagttcgtcgacgtggtcatcaccgaggcgctgaccaattcgctgcgcgggcgc
atcgtcaccgccggctga
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