Shewanella aegiceratis: K0H80_03060
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Entry
K0H80_03060 CDS
T09153
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
saeg
Shewanella aegiceratis
Pathway
saeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0H80_03060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saeg03019
]
K0H80_03060
Enzymes [BR:
saeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0H80_03060
Messenger RNA biogenesis [BR:
saeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0H80_03060
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_22
P-loop_SecA
UTP25
HEM4
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QYJ83021
LinkDB
All DBs
Position
complement(674632..676119)
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AA seq
495 aa
AA seq
DB search
MSFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL
ELLSQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQISQL
KRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKRQ
NLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKLIQQ
GDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDIRVLVAT
DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLADIER
LIGKLLPRAEVEGFEPTHTLPETNLTPKRHGQHKGPRNPKPKSNSQRNGQRSSNRSSNGQ
GSDKAGQPRRDDKAQGNKGDQGRRRTGASTGTSKPASEGQQAQNQGKQEHRDGNAPARRR
RRRRPSQGTPKPATN
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacctccctggggttatccgcccccatactcaaagctgtagccgacaaaggt
tatcaaaccccctcgcccattcaggcccaggctatcccagcagtattgtcgggtaaagat
gtgatggcggcggcgcagacagggacgggcaagacagccggctttaccctgccgctactg
gaactactcagtcagggcccccgcgcccgcagcaaacaggtgcgcgctctggtcttgacg
ccaacccgcgaactggcggcccagatcgccgaaagcgtcaccacctatggtcagcatctg
ccgcttcgcagcgccgtagtgttcggcggtgtcggcatcagcccacagatcagtcaactt
aagcgcggcgtcgatatcctggtggccacaccgggccgtctgttggatctctatcagcaa
gatgccgtgagcttctctcagctggagacactggtgctggatgaggccgaccgcatgctg
gacatgggctttattcacgacatcaagaagatactcgccatcttaccgcccaagcggcag
aacctgatgttttccgccaccttctccgatgagatccgcaccctggccaaggggctggtg
aacaatccggtggagatctcggtcaccccgcgcaacagcacagccaacacggtacagcag
ctgatctgcccggtagacaaaaacaagaaatccgcagccttggtcaagcttatccagcaa
ggtgactggcaacaggtcttggtatttagccgtaccaagcatggcgccaaccgtctggct
aagcatctcgaggccaaagggatcaccgccgcagccatccatggtaacaagagccagggt
gcccgcaccaaggcgctggctaactttaagtcgggcgacatccgcgttctcgtagccacc
gacatcgccgcccgtggtctggatatcgaccagctgcctcaagtcgtcaacttcgacctg
cctaacgtgcccgaagattatgtgcatcgcatcggccgtaccggccgcgcgggcgccgac
ggcaaagcggtctccctggtgagcgatgaagaagccaagctgctggcggatatcgagcgc
ctgatcggcaagctgctgccgcgtgctgaagtagaggggttcgagccgacacacaccctg
cccgagaccaatctgacgcctaagcgccatggtcaacacaagggaccgcgtaaccctaag
cctaaaagcaacagccaacgcaatggccaacgcagcagcaatcgttcaagcaacggccag
ggttcagacaaggcaggccagcctcgccgcgacgataaagctcagggcaacaaaggggat
cagggccgtcgccgaacaggcgcaagtactggtacaagcaagcctgcgagcgaaggtcaa
caagcgcaaaaccaaggcaaacaggagcacagggacggtaacgctccagcacgccgtcgc
agacgtcgtcgccctagccagggcacgcctaaaccggccactaattag
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