Shewanella aestuarii: HBH39_09780
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Entry
HBH39_09780 CDS
T06921
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
saes
Shewanella aestuarii
Pathway
saes03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
saes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HBH39_09780 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saes03400
]
HBH39_09780 (mfd)
Enzymes [BR:
saes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HBH39_09780 (mfd)
DNA repair and recombination proteins [BR:
saes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HBH39_09780 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QIR14741
UniProt:
A0A6G9QLM9
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All DBs
Position
PN3F2:2172113..2175622
Genome browser
AA seq
1169 aa
AA seq
DB search
MKQFNVIAPPSVKKGQQLQTLATLGGVSQALTIANLIKQHSGTSLIVTHDTPSALTLEAE
LSYLLANHPVNVCLFPDRETLPYDNFSPHQDLISQRLESLAQISQSSHNVVIVPVNTLMV
RLPPKSFLTANVMILKKGDIYGLSQVRQHLTDTGYHVVDQVYEHGEFAIRGSIIDIFPTG
SKQPLRIELFDDEVESIRFFDVDSQRSGMALDQIRMLPAKEFPTDSAAIEGFRQRYRRRF
EVISKEPESVYQLVSRNLMPAGIENYLPLFFDETASLFDYLPEQSQLITLGDIEKSCQQH
LDEIHTRYEDRRVDPLRPLLEPKELYLLSDQLFSAFKPMQRSQLINLPLNEAKQVDIDAL
PKHALSAKATALPDINANHKLKQPLLALKEFSQTQQQILFVAESEGRREALLELFAKIDI
KPKLFKHLDDYLSGKDPIGLLVSPLSRGALIDIEPKGNVSVICETELFGHRISQQRRREK
QKQVSSDVLVKNLAELRVGQPIVHLEHGVALYQGLETLDTGGLVAEYLKLEYAGGDKLYV
PVSSLHLISRYSVGNEETTQLNKLGNETWAKAKKKAIERIRDVAAELLDVYARRQARPGE
ALSLDKEEYAVFAQAFPFEETVDQETAIDAVLTDLQAPMAMDRLVCGDVGFGKTEVAMRA
AFVAVNAGKQVVVLVPTTLLAQQHFENFKDRFADWPVVIEVMSRFRTSKEQNQVLDSLQE
GKVDIIIGTHKLLSSEAKFDNLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPR
TLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDKATVKEAISREILRGGQVYYLHNNVET
IEKAAQDIRDLLPEARVVTAHGQMRERDLEKVMSDFYHQRFNVLVCTTIIETGIDVPSAN
TILIHRADMFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGA
GFLLATQDLEIRGAGELLGDEQSGHISKIGFSLYMELLESAVKSLKQGKEPSLANMLNAI
CDIDLRIPALLPEDYVGDVNMRLSLYKRIANCHTESMVDELKVEFIDRFGMLPDQTRNLM
DLTVFKHQATSLGLQKIEMHAKGGSIEFGEHHQIDPMFIIDLLQKQPQIYRMDGPNKLKF
TIPTETSKDRLALLKTLLEQLAKHQTGEQ
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaatttaatgttatcgcgccacccagtgtcaaaaaaggccaacaacttcaaacc
ttagccacactagggggagtttctcaagcactcaccatcgccaatttgattaaacagcac
tcaggcaccagtcttattgtcactcacgatacccccagcgcattaaccctagaagccgag
ttaagttatttattagccaatcaccccgtcaatgtgtgtttatttcctgatcgtgaaacg
cttccttacgacaatttttcaccgcatcaagatttaatatctcaacgattagagtcatta
gcgcaaattagccagagctcgcacaatgtggttattgtgccagtcaacaccctaatggtt
cgcttaccgccaaaatcgtttttaaccgcaaatgtcatgatcctaaaaaaaggtgacatt
tatggattaagtcaggtacgccaacatttaaccgacacaggttaccatgttgtcgaccaa
gtatacgaacacggtgagtttgctattcgcggttcaattattgatatttttcctacgggt
tcaaaacagccattgcggatagaattgtttgacgacgaagtcgaatctattcgctttttt
gatgttgatagccagcgttcaggcatggcgctcgaccaaattcgcatgttgccagcgaaa
gaatttcctaccgacagtgcagccattgaaggtttcagacaacgctatcgtcgccgcttt
gaagtgatttcaaaagaacctgaatccgtctaccagctggtcagtcgtaacttaatgcct
gcagggattgaaaattatctgccattattctttgatgaaacggctagcttgtttgattac
ctaccagaacaaagccaattaatcacccttggtgatattgaaaagtcgtgtcagcaacac
ctagacgaaatacatactcgctatgaagatcgccgagtcgacccactgcggcctttactt
gaacccaaagagctatacctattaagcgatcaactgtttagcgccttcaaacccatgcag
cgcagccaactcattaatctaccgcttaatgaagccaaacaagttgatattgatgcttta
ccaaaacatgcattaagcgccaaagccacagcgcttcctgatatcaacgcgaatcacaaa
ttaaaacagccgctactcgcgcttaaagaattcagtcaaacacaacagcaaatattgttt
gtggcagaatctgaagggcgacgggaggcattgcttgaactattcgccaaaattgatatt
aagcctaaattatttaagcacttagatgattaccttagcggcaaagatccaattggttta
ttagtatcgcctttgtctcgtggggcactaatcgatattgagccaaagggcaatgtcagt
gttatttgtgaaaccgagttgttcggtcatcggatttcgcagcaacgacgccgcgaaaaa
caaaaacaagtcagttctgatgttttagtcaaaaacttagcagaattaagggttggccaa
cccatagtgcatttagagcatggggttgcgctttaccaaggcttagaaactcttgatacc
ggaggcttagtcgctgaatacttaaaacttgaatatgccggtggcgacaaattatacgta
cctgtgtcatctttgcatttaatcagccgttatagtgtaggcaatgaagaaaccacccaa
ctgaataagttaggaaacgaaacttgggcaaaagccaagaaaaaggccattgaacgcatt
cgagacgtcgctgcagagttactggatgtgtatgccagacgtcaagcacgaccaggtgag
gccttaagccttgataaagaagaatatgctgtatttgcgcaagcttttccgtttgaagaa
actgtggatcaagaaactgccattgatgccgttctaaccgatttacaagcgccaatggca
atggatcgcttagtgtgcggagatgtcggctttggtaaaaccgaagtcgcaatgcgcgca
gcctttgttgccgtcaatgccggcaagcaagtcgtcgtattagtgcctaccaccttgctt
gcccagcaacattttgaaaacttcaaagaccgttttgccgattggcctgtcgtgattgag
gttatgtcacgctttcgtaccagcaaagagcaaaatcaagtactagactcactgcaagaa
ggtaaagtcgatattataattggcacccacaagttactgtcttcagaagctaaatttgat
aatttaggcttattaattattgatgaagaacatcgctttggtgttcgtcaaaaagaaaaa
atcaaagccctacgagccaatgtcgatattttaactttaactgctacacctattcccaga
acgcttaatatggcgatgtcgggaatgcgtgatttatccatcatagccaccccacccgct
aagcgacttgcggtaaaaacctttgtgcgtgaatatgataaagccacagttaaagaagcc
atatcccgtgagattttacgtggtggtcaggtatattatttacataataacgtcgaaacc
attgaaaaagcggcacaagatatacgtgatttactgccagaagctcgagtggtaaccgcc
catggtcaaatgcgcgaacgcgatcttgaaaaggtcatgtcagatttttatcatcaacgc
ttcaatgtattagtgtgtaccaccatcattgaaaccggtattgacgtacccagtgccaac
actattttaatccaccgcgctgatatgtttggcctagcccaattacatcaactacgtggt
cgtgtgggtcgatctcaccatcaagcctatgcgtatttgatgactcctcacccaaaacga
atgacatccgatgcacgtaaacgcttagaagccatagacgcattagaagatttaggtgca
ggattcttattggctactcaagatttagaaattcgtggtgcgggtgaattacttggcgat
gagcaaagcggccatatcagtaaaattggtttcagtttgtatatggaattgcttgaatcg
gcagtaaaatctctaaaacaaggtaaagagccatcactggccaatatgttaaatgcaatt
tgcgatatcgatttacgcatacccgcattgttacctgaagactatgtcggtgatgtcaac
atgcgtttatccttgtataagcgtattgcgaattgtcatactgaatctatggttgatgag
ctcaaagtcgaatttattgatcgctttggaatgctgccagatcaaacccgcaatctgatg
gatttaaccgtatttaagcatcaggcaactagtttgggtttacaaaaaattgaaatgcat
gcaaaaggtggcagtattgaatttggtgaacatcaccagatagatccaatgtttattatc
gatttattgcaaaagcagccacaaatctatcgaatggatggcccaaataagttaaagttc
accattccaactgaaacaagtaaagacagattagcattactaaaaaccttacttgagcag
cttgcaaaacatcaaactggagagcaatag
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integrated database retrieval system
