Sulfurihydrogenibium azorense: SULAZ_1640
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Entry
SULAZ_1640 CDS
T00876
Name
(GenBank) transcription-repair-coupling factor (trcf) (ATP-dependent helicase mfd)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
saf
Sulfurihydrogenibium azorense
Pathway
saf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
saf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SULAZ_1640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saf03400
]
SULAZ_1640
Enzymes [BR:
saf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SULAZ_1640
DNA repair and recombination proteins [BR:
saf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SULAZ_1640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
TRCF
CarD_TRCF_RID
UvrB_inter
Peptidase_S51
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACN98799
UniProt:
C1DWW2
LinkDB
All DBs
Position
complement(1528982..1531798)
Genome browser
AA seq
938 aa
AA seq
DB search
MYIGNSSYPEYFLIKKSFDKAVFVVNSEKKTKESFINLSSYKDFFSSSKEILFIPSSKDV
LDLESQIERNYAVYKWLTTPKAILVLSKDALDVRLRPLEEFNKSLILLEKGSSLDRDFLV
ERLLKVGYIKEDYPENEGEFSVKGGYISINVPKVGIVDIDLFGDEIESLYLKSKLLTKKE
INQIYIYPLYDFDILSHSPLQLKDENFVYLRDYINEDIYTLDIFENLNQKVSFFSDLSDK
NIGSLKDIDESFKVVKIPVKNELILLDEKVAFLPEIEDKNLDLDVDPIKEGDYIIHEDYG
IGVFKGIETREIRGKVYDFMILEYAEGEKVYVSYLHFDKIHKYKTQGFIKLDKIGAPSWK
NLKKRVKESLKNLARQLIKLYSERQSIKRPPLDVEGQLITKFERDFPYVETPDQLKAIKE
VKKDLSKDRPMERLICGDVGFGKTEVAIRSAFIHAVNGYQTLVLVPTTVLAYQHYVKFKE
RLEKYGLIVENLSRLKTKSQQEEIIKKLEEGKIDVVVATHKALSDNVKFKNLGLLIIDEE
HRFGVRAKEKIRQLKKSIDTLYLTATPIPRTLNMALSGLKDISVINTPPEGRYEVKTYVS
PFDENILKKAVEFELNRKGQVFYVHNRVETIEERVNYLKTLFKNAKVDFIHGQMKPSEIE
KKILYFIEGKIDILVSTSIIETGIDIPTANTLIVERADLFGLAQLYHLRGRVGRGNIQAY
CYLFIPKEITKDARRRLDAILKLTRPGSGLKVSIEDLQIRGPGNILGIEQSGFIKSVGFD
MYVKLLKEALSETSGESEFQPQLDLDFDYYIPQSFVENPQERMNLYLAVSKAESYEDIEK
IRKYLKEFYSELPSIFNLYLSVEKIKRILKSLKIKKLSLKEGRGFLEFSKDTKPEVIHTL
LKELKPYKVESSAIHFYTKEIEELNSVFEKTIKSVKIE
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
ttgtacataggaaacagttcttaccctgagtactttttaattaagaaatcttttgataaa
gctgtttttgttgtaaactctgaaaaaaaaaccaaagagagttttattaatctctcttct
tacaaagacttttttagcagttctaaagaaattttatttataccttcatcaaaagatgtg
ttagacttagaaagtcaaatagagagaaactacgcagtatataagtggctgactactcca
aaggctatcttagtcttatcaaaagacgctttagatgtaagattaagacctttagaagaa
tttaataaatctttgatacttttagaaaaaggtagtagcttagatagggattttttagtt
gagaggcttttaaaagttggttatataaaggaagattatccagagaatgaaggagagttt
agcgtaaaaggtggctacataagtataaacgtccctaaagtgggaatagttgatattgac
ctttttggagatgagatagaaagtctctatttaaagtctaaacttcttacaaaaaaagag
ataaaccagatttacatttaccccctttacgattttgacattttatcccatagtccttta
caacttaaagatgaaaattttgtttatcttagagattatataaatgaagatatttacact
ttagacatttttgaaaacttaaatcagaaggtatccttcttcagtgatctatctgataaa
aacataggaagtttaaaagatattgacgaaagctttaaagttgtaaagataccagttaaa
aatgaacttattttattagatgaaaaagtagcatttttaccagagattgaggataaaaat
ttagatttagatgtagaccctataaaagagggggattacataatccatgaagattacgga
ataggagtattcaaaggaatagagaccagagagataagaggaaaagtttacgactttatg
attttagagtatgcagaaggagaaaaagtatacgtttcctaccttcactttgataaaatt
cacaaatacaaaacccaaggctttataaaacttgacaaaataggagctccatcttggaaa
aatcttaaaaagagagtaaaagagtctctaaaaaacttggcaagacagcttataaaactt
tactctgaaagacagagtataaaaagaccacctttagatgtagaaggccagttaataaca
aaatttgaaagggactttccatatgttgagacaccagaccagcttaaagctattaaagaa
gttaaaaaagatttatctaaagacagacccatggaaaggctaatatgtggagacgttgga
tttggtaaaacagaagttgcaattaggtcagcttttattcatgctgtaaacggctatcag
acattagttttagtccctacaactgttttagcataccagcactatgtaaagtttaaagaa
agattagaaaaatacggcttgattgtagaaaacttatcaagactaaagactaaatcacag
caagaagagataataaaaaagttagaagaaggaaaaatagatgtagttgtggcaactcat
aaagcgttatcagacaacgtaaagtttaaaaatcttggattacttataatagatgaagaa
cataggtttggagtaagggcaaaagaaaaaattagacagctgaaaaagagtatagacacc
ctttatttaactgcaactcctattccaagaaccttaaacatggcactgtcgggattaaaa
gatatatcagttataaacactccaccagaaggaaggtatgaggtaaaaacgtacgtatca
ccttttgatgaaaacatacttaaaaaagctgtagagtttgaactaaatagaaaaggtcag
gttttctacgttcataacagggtagaaacgatagaggagagggtaaactaccttaaaact
ttatttaaaaacgcaaaagttgactttattcacggccagatgaaaccatcagagatagaa
aagaaaatactttattttatagaaggtaaaatagatattctcgtatcaacctcaataata
gagactggtatagacattccaactgctaacacgttaatagttgaaagggctgaccttttt
ggacttgcccagctatatcatttaagaggtagagtaggaaggggaaacattcaggcttac
tgttatctctttatcccaaaagagattacaaaagatgcaagaagaagacttgacgcgatt
ttaaagttaacaaggccaggttcaggattaaaagtatctatagaagatcttcaaataaga
ggtccagggaacattttaggtatagagcaaagcggttttataaagtctgtagggtttgat
atgtatgtaaaactcttaaaagaagctttgtcagaaacttcaggagaaagtgagtttcag
cctcaattagaccttgactttgattactacataccccaatctttcgtagaaaatccccaa
gaaagaatgaacctatacttagcagtatcaaaagcagaaagttatgaagatatagaaaaa
atcagaaagtatcttaaagagttttacagtgaactaccatctatctttaacctatacctt
tccgtagagaagataaaaaggattttaaaatcgttaaagataaaaaaactttcattgaaa
gaaggtagaggctttttagagttttctaaagatacaaaaccagaggttatacacactctt
ttaaaagagttaaaaccttataaagtagaatcatctgcaatccacttttacacaaaggaa
atagaagagttaaactcagtatttgaaaaaacaatcaaaagcgttaaaatagaataa
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