Simiduia agarivorans: M5M_01205
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Entry
M5M_01205 CDS
T02281
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
saga
Simiduia agarivorans
Pathway
saga03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
saga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M5M_01205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saga03400
]
M5M_01205
Enzymes [BR:
saga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M5M_01205
DNA repair and recombination proteins [BR:
saga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M5M_01205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AroM
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFU97472
UniProt:
K4KU13
LinkDB
All DBs
Position
complement(260510..263938)
Genome browser
AA seq
1142 aa
AA seq
DB search
MDLTEPLGQLSPPLSNKPKFNQRWGKLPGAAVALAVSQATRAFDGLLLVITPDTASSLAL
QDELRFFCGDSTPILTLPDWETLPYDTFSPHQDIISERIKALYRLPTTRKGILVAPLTTL
MCRLPPQQFVAGHSLVLNKGQTFDLNAQARVLEANGYHRVDTVYEHGEFAVRGALLDIYP
AGSDWPLRIDLFDDEIESLRSFDPDTQRTLEQIDSIELLPAREFPLTKAAISDFRLRWHD
AFDVDHKACPVYQDICDGIAPAGIEYYLPLFFDQCATLFDYLPENSRVLTYDNLIPKADR
FWTEASNRYESRRVDPERPLLPPAKVFVPVNELFEHINSLPRTELNDDAPVIPALTPPQA
PVDAKADQPLQALLDLLRSDRKTLFTVDSAGRREILLEMLAKAGIKPTAVNGWSDFIAAE
NSPCIAIAGLDQGLALSTPAVQIITENQLFGERVQQRRRRRVTQENELAVKNLSELNPGA
PVVHIDHGVGRYQGLITLDLDGQPQEFLQLSYANDAKLYVPVANLHLISRYSGADDNLAP
LHKLGSDSWDKAKRKAAEKVRDTAAELLDIYARRAARKGFAFADPGAAYQAFAASFPFEE
TPDQEQAIANVRKDMLASTPMDRLVCGDVGFGKTEVAMRAAFIAVQSGKQVAMLVPTTLL
AQQHYESFKDRFADWPVNIEVVSRFKTGKEIDAIADKLKDGKVDIIVGTHKLLQPDFNYQ
SLGLLIIDEEHRFGVRQKEALKSIRSEVDILTLTATPIPRTLNMSMAGIRDLSIIATPPN
KRLSIKTFVRVHDDALIKEAILRELLRGGQVYYLHNEVKSIEKTARELQALVPEARIGIG
HGQMRERDLEKVMADFYHKRFNLLVATTIIETGIDVPSANTIIIERADKFGLAQLHQLRG
RVGRSHHQAYAYLMTPNPKTLTSDATKRLEAIAQADTLGAGFTLATHDMEIRGAGELLGD
EQSGQIEAVGFSMYMDMLNRAVKAIQAGKTPDLDAPLGSAVEINLRIPALIPDDYLPDVH
SRLIMYKRIANAADEGALKELQVEMIDRFGLLPDPVKNLFRITGLKLTAEAMGIEKLEAG
PTGGKISFNKEPKVDPLKIIKLVQTQPQKYQMHGANGLKFLHDMESTEIRLATTEALLAN
LV
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggatcttacagagcccctgggccagctatctccgcctctctcaaacaaacccaaattc
aatcagcgctggggcaagctgcccggtgccgcagtcgctctcgccgtcagccaggccacc
cgggctttcgacggcctgctgctggtcatcacacccgatactgccagttccctggcactg
caggatgaattgcggttcttctgtggcgatagcacgccgatactgaccctgccggactgg
gaaaccctgccctacgatacgttcagccctcaccaggacattatttccgagcggatcaaa
gcgctgtaccggttgccgactacccgcaagggcattctggtggccccgctcaccaccctg
atgtgccgactgccgcctcagcaatttgtggcgggccacagcctggtgctcaacaaaggc
cagacattcgatctcaatgctcaggcccgggtgctggaggccaacggctaccaccgggta
gacactgtgtatgaacacggcgaatttgccgttcgcggggcactgctggatatctacccg
gcgggcagcgactggccactgcgcatcgacctgttcgatgatgaaatcgaaagcctgcgc
agttttgaccccgatacccagcgcacactggaacagatagacagcatcgagttgttgcct
gcgcgggaatttccgctcaccaaagccgccatcagcgacttccgtttgcgctggcatgac
gcctttgatgtggaccacaaagcctgtcccgtttaccaggatatttgcgatggcattgca
ccggccggtatcgaatattatctgcccctgttctttgaccagtgcgccaccctgttcgac
tacctgcccgagaacagccgtgtccttacctacgacaacctgattccaaaggctgaccgg
ttctggactgaagccagcaaccgctatgaaagccggcgcgtggaccccgagcgccccctg
ctgccaccggccaaagtatttgtgccggtcaacgagctgttcgaacatatcaacagcctg
ccacgcaccgaactcaatgatgatgctcccgtcattccggccctgacgccaccccaagcg
ccggtggacgccaaagcagaccagccattgcaggcgctgctggatctgttgcgctcggac
cgcaaaaccctgtttacagtcgatagcgccggccgccgggaaatcttattggaaatgttg
gcgaaagcaggcataaaacctactgccgtcaacggttggtccgattttatcgcggccgaa
aattcaccctgcattgccatcgccggcctcgaccagggcctggcgctgagcacgccagcg
gtacaaatcatcaccgaaaaccaattgttcggtgagcgggttcagcagcgccggcgccgg
cgggtcacacaggaaaatgagctcgcggtcaaaaacctgagcgaattgaacccgggcgcg
ccggtggttcatatcgatcatggcgtgggccgttatcagggtctgattacgctggacctc
gatggtcagccacaggaatttttacagctcagctacgccaacgacgccaaactctatgta
ccggttgcgaacctgcacctgatcagccgctattcgggcgccgatgacaacctggcacca
ctgcacaaattaggcagcgacagctgggataaagccaaacgcaaagccgctgaaaaagtc
cgcgataccgccgcagaactgctcgatatctatgcccggcgggccgcacgcaagggcttc
gcatttgccgaccccggcgctgcttaccaggcgtttgcagcctcctttccgtttgaggaa
acccccgatcaggaacaggccattgccaacgtgcgcaaggacatgctcgcctccacaccc
atggaccgtctggtgtgcggcgacgtgggctttggcaaaaccgaagtggccatgcgcgcc
gcattcatcgccgtgcaaagtggcaaacaggtggccatgctggtgcccaccaccctgctc
gcacaacagcactatgaaagctttaaagaccgctttgccgactggccggtaaatatcgaa
gtggtctcacggtttaagaccggcaaagaaattgatgccattgccgacaaactcaaagac
ggcaaggtggacatcattgtcggcacccataaattattgcagcccgacttcaattaccag
tcgctgggtcttctgattattgacgaagaacaccggtttggtgttcgtcaaaaagaagca
ctgaaatccattcgctcggaagtggatattctgaccctgaccgcaacgccaattccccgc
acgctgaacatgagcatggcgggcattcgcgacctgtccatcatcgccacgccgccgaac
aaacgcctgagcatcaaaacctttgtgcgcgtgcatgacgatgcactgatcaaagaggcc
atattgcgggagctcctgcgcggcggccaggtgtattatttgcacaacgaagtcaaaagc
atcgaaaaaaccgcgcgcgaattgcaggcattggttcccgaggcccgcatcggtatcggc
catggacaaatgcgcgaacgggacctggaaaaagtcatggcagacttttaccacaaacgg
ttcaacttactggtggccaccacgatcattgaaaccggcattgatgttccgagcgcaaac
accatcatcattgagcgcgcggataaattcgggcttgcgcagttgcaccaattgcgtggg
cgcgtgggtcgctcgcaccatcaggcctatgcctatttaatgacccccaatccgaaaacc
ctgaccagcgacgccaccaagcggttggaggcaatcgctcaggccgacaccctgggtgcc
ggctttacccttgcgacccacgacatggaaatccgcggcgccggcgaactgctcggcgac
gagcaaagcggtcaaattgaagcggtcggtttcagcatgtacatggacatgctcaatcgc
gcggtcaaagccattcaggcgggtaaaacccctgacctcgatgcgccattaggcagcgca
gtagaaatcaacctgcgcataccggcactgatccccgacgactatctgcccgatgtgcac
agccgtctgatcatgtacaagcgcatcgccaacgccgccgatgaaggcgcgttaaaagaa
ctgcaagtggaaatgatcgaccgcttcgggctcttgcctgacccggtcaaaaacctgttc
cgcattaccggcctgaaactcaccgcagaggcaatgggcatcgaaaaactcgaggcgggc
cccaccgggggcaaaatcagtttcaacaaagagcccaaggtcgacccgttgaaaatcatc
aagctggtgcaaactcaaccgcaaaaataccaaatgcacggtgccaatggtttgaaattc
ctgcatgatatggaaagcactgaaatccgactggccaccaccgaggccttacttgccaac
ctggtttaa
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