Salinimicrobium tongyeongense: JRG66_06305
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Entry
JRG66_06305 CDS
T08572
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sahn
Salinimicrobium tongyeongense
Pathway
sahn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sahn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JRG66_06305 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sahn03400
]
JRG66_06305 (mfd)
Enzymes [BR:
sahn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JRG66_06305 (mfd)
DNA repair and recombination proteins [BR:
sahn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JRG66_06305 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
UZH56469
LinkDB
All DBs
Position
complement(1423556..1426918)
Genome browser
AA seq
1120 aa
AA seq
DB search
MSKSSIAQSFAQSALQLELGKALALPRTQVQLKGLVGSALSFVIANAFEEAEKPFLLIFN
DKEEAAYYLNDLEQLLGDKNVLFYPGSYRRPYQLEETDNANVLLRAEVLNRINSRKKPAL
IITYPDALFEKVVTRKELEKNTLKIKVGDELSIDFVNEVMFEYKFKRVDFVTEPGEFSVR
GGILDVFSFSNDEPYRIEFFGDEVESIRTFDVETQLSTDQVKKITVIPNVEHKRLQEVRE
SFLRYISDQTLIFSQEPELLFSQIDKLFSKAEEAFKNLSEEIKHNEPEELFCNSALLKEQ
MQEYSLVVTNSHQPEDIAETIEFNTKPQPSFNKNFELLIQNFRENSEDGFTNYIFCVSEQ
QAKRFHDIFDDVDQEVKYKTVVLSMYQGFVAEDQKMVCYTDHQIFERYHKFHLKNGYAKK
QAITLKELTNLEVGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLIYGERDVLYLSIHSL
HKISKYNGKDGKPPKIYKLGSNAWKNLKQKTKARVKNIAFNLIELYAKRRLQKGFAYGPD
SYLQHELEASFLYEDTPDQSTATADVKADMENERPMDRLVCGDVGFGKTEVAIRAAFKAV
DNGKQVAVLVPTTILAFQHYKTFTERLKDFPVTVDYLNRFRTAKERKTTLEELENGKVDI
VIGTHQLVNKNVKFKDLGLLIVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFS
LMAARDLSTITTPPPNRYPIESHVIRFSEENIRDAVSYEIQRGGQVFFIHNRLENIKEVA
GMIQRLVPDAKIGIGHGQMEGKKLEQLMLKFMNGEFDVLVSTTIVESGLDVPNANTIFIN
NANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKRITALEQFSELGSGFNIA
MKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELKENEFRDIYQEQEKEDKEYV
KDTQIDTDFELLFPDDYINNISERLNLYTQLNNLKTEEELQKFEAELVDRFGELPTQAED
LLNSVRIKWIASKIGVEKIIMKQGKLIGYFIADQQSRFYQSKAFTRVLQYVQTHSHSCTM
KEKKTRSGLRLLLTFEKVTTVDRALKVLQPLDVKAEVEAP
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaatcttctattgcccaaagctttgcacagtcggctctacagcttgaactgggg
aaagcgcttgccctgccgcgaactcaggtgcagttaaaaggcctcgtaggctctgcactt
tcctttgttattgccaatgcttttgaagaagctgaaaagccttttttgctcattttcaat
gacaaggaagaagctgcttactacctgaatgacctcgagcagttgctgggtgacaaaaat
gtgcttttttatcctggaagttaccgccgtccttaccagctggaagaaaccgataatgcc
aacgtgctgcttcgggcagaggtacttaacaggatcaactcccgaaaaaaacctgcgctg
ataattacctatccagatgccctttttgagaaggtagtgaccaggaaagagctggaaaag
aacacactcaagatcaaggttggtgacgaactctctatcgactttgtgaacgaagtgatg
ttcgaatacaagttcaaaagagtggattttgttacagagccgggtgagttttcggtgcgt
ggaggaatcctcgacgtgttttctttcagtaatgacgagccttacaggatagaatttttt
ggcgatgaggtagaaagcatcaggacctttgatgtggagacgcagttgtctacagatcag
gtgaagaagatcacggtgatcccgaatgtggagcacaaaaggcttcaggaggtgcgggag
agttttttgaggtatatttcagatcaaacgctaatcttcagccaggaaccggaattgttg
ttttcccagatagataagcttttcagcaaagccgaagaagcttttaaaaatctttccgaa
gaaataaagcacaatgagcccgaagaattgttctgtaattcggcacttttgaaggagcag
atgcaggagtattcgctggtggtgaccaactcccatcaaccagaagatattgctgaaaca
atagagttcaacaccaaaccccagccatccttcaacaagaattttgaactgcttattcag
aatttcagggagaacagcgaagacggttttaccaattatattttttgcgtaagcgagcag
caggccaagcggtttcatgacatttttgatgatgttgaccaggaggtgaaatataagact
gtggtgctttctatgtaccaggggtttgttgctgaagatcaaaaaatggtgtgctacaca
gatcaccagatctttgagcgctaccacaaattccacctgaaaaatgggtacgccaagaaa
caggcgatcacgctgaaggagctcaccaatcttgaagtcggcgattatgtgacgcacatt
gaccacggaatcgggaaattcggcggactccaaaagatagacgtggaagggaagaagcag
gaggccatcaagctgatctacggcgaacgcgacgtgctgtacctaagcatccactcgctg
cacaagatatcaaaatacaacgggaaggacgggaagccgcccaagatctataaactgggc
agcaacgcctggaaaaacctgaagcaaaagactaaagcacgggtcaagaatattgctttt
aacctaatcgagctgtatgccaagcgcaggctgcaaaaaggctttgcctacgggccagat
tcttacctgcagcacgaactcgaagcctccttcctctacgaagatacacccgaccagagt
accgccacggccgatgttaaagccgatatggaaaacgaacggcctatggaccgcctggtg
tgcggggatgttggcttcggaaagaccgaagttgcgattagagccgcattcaaggcagtt
gataacggcaaacaggtggcagtactggtgcctactaccattctggcttttcaacactac
aagacatttacagaacgcctgaaggattttcctgtcaccgtagattacctgaaccgcttt
agaacggcgaaggagcgaaagacaaccctggaagaactggagaacgggaaagttgatatt
gtgattgggacccatcagctggtgaataaaaatgtgaagtttaaagatctcgggctgctt
atcgtagatgaagagcagaagtttggggtggccgtaaaagataagctgaagaccatcaag
gaaaacgtggatacgctcaccttaactgcgacgccgattccacggacattgcagtttagt
ttgatggcggcgagggatctttctaccattaccactccgccgccaaaccggtatcctatt
gagtcgcatgtgataagattttctgaagagaatattcgcgatgcggtttcttatgaaatt
cagcggggcggacaggtgttctttattcacaatcgtttagagaacatcaaggaagtcgcc
gggatgatccaaagactggtacctgatgcgaagatagggataggacatggacaaatggaa
gggaagaagctggagcagcttatgctgaagttcatgaatggcgaatttgacgtgctcgtt
tccaccaccattgtggaaagcggactcgatgtgccgaatgccaacaccatctttattaac
aacgccaataacttcggattgtctgatcttcaccagatgcgcggaagggtaggccgaagc
aataaaaaagcattctgctatttcatcacgccaccatattctgccatgaccgatgatgcc
aggaaacgaattaccgctttggagcaattcagtgaactgggcagcggcttcaatattgcg
atgaaagatctggaaattcgtggcgcaggtgaccttttgggaggggaacaaagcggattc
atcaacgaaattggttttgatacttaccagaagatcctcaacgaagccattgaagagctg
aaggaaaatgaattcagggacatatatcaggagcaggagaaagaggataaggaatacgtg
aaggacacgcagatagataccgattttgaattgctgttccccgatgattatatcaacaac
atttctgaaaggctgaatctttacacccagctcaacaacctgaaaacggaagaagagctt
cagaaatttgaagccgaactggtagaccggtttggggaactgccaactcaggccgaagat
ctgctgaacagcgtccgcatcaaatggatcgcttcaaaaataggagtcgagaaaataata
atgaagcagggcaagctgataggctatttcattgccgaccagcagtctcgtttctatcaa
agtaaagcttttacaagagtgctgcaatatgtgcaaacgcattcgcacagctgcaccatg
aaagaaaagaaaacccgcagtggattgaggttgttgctgacatttgagaaggtgacaact
gtcgatagagcattgaaagtgctacagccgctggatgtgaaggcggaggttgaagccccc
tag
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