Salinicola sp. JS01: QO259_07345
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Entry
QO259_07345 CDS
T09138
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sajs
Salinicola sp. JS01
Pathway
sajs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sajs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QO259_07345 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sajs03400
]
QO259_07345 (mfd)
Enzymes [BR:
sajs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QO259_07345 (mfd)
DNA repair and recombination proteins [BR:
sajs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QO259_07345 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WIX34456
UniProt:
A0A9Y2DD62
LinkDB
All DBs
Position
complement(1623903..1627352)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSQFSPLSPPQPQGVRETIYCQRPHGSALALTLARLADDAPLLVITPDTAAAQRLESALR
FYAQVPVMPFPDWETLPYDSFSPHQDIVSARLRTLRELQEGTRGIVLVPINTLMQRLPPR
DYVAGRVLTLTTGERLDREGFRERLSRAGYRAVETVYEPGEYAMRGALIDLFPMGTETPL
RIDLFDDEIDSLRRFDPDTQRSQDKIERVELLPAHEYSLSRSAIACFREGFETLFDVDPR
QCPLYVDALKGIPSPGLEQYLPLFFEETATLFEHLDAGTRVALLPETYAAAESHWRAIES
RYENLGVDPTRPLLPPARAFVPVAEVFAAIKRHPRLEFVAAEDTRSAAASATQAPPAVSI
NARAQRPLATLEQFLASHQGLRVLFVAESRGRREALEEALAPLHLSLPHVDDWHAFREGS
MPYAIGEGGLDEGLWLGDPELAVITETELYGEVVRQSRRRAKATDDNELAVRHLSELRPG
SPVVHQHHGVGRYQGLETIHAGGVAAEFLALEYAGGAKLYVPVDNLQLISRYAGASDELA
PLHKLGSDSWDKAKRKAAEKVRDTAAELLDIYARREAREGFASDMPGDEYARFAASFPFE
ETPDQQAAIEAVIHDMTAPRPMDRVVCGDVGFGKTEVAMRAAFLAVSSGRQVVVLVPTTL
LAQQHYDNFRDRFADTAVQIEMLSRFTGGKGESDTLARIAEGRADIVIGTHKLLSKSIKL
PNLGLMIIDEEHRFGVAQKERLKQLRAEVDILTLTATPIPRTLNMAMNGIRDLSIIATPP
ARRLSVKTFVQNRNEAVVKEALLREILRGGQVYLLHNEVRTIEASADKIRELVPEARVGV
AHGQLPERALERVMSDFYHKRFNVLVCSTIIETGIDVPSANTIIIERADKFGLAQLHQLR
GRVGRSHHQAYAYLLTPPPKAMTKDAIKRLEAITQSDDLGAGFTLASHDMEIRGAGELLG
DEQSGQMETVGYSLYMQMLDRAVKAIRAGKTPNIEAPLDEGTEISLNLPALIPDDYLPDI
QQRLIMYKRISSAADEGELKELQVEMIDRFGLLPGPLKTLFRQTRLRQRAERLGIARLEA
GPERGRVIFGADPQVDPMTLVELIQRHPKEYRLDGADTLRFSAEMEQAEARLARVDALLD
ILNRKAKAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaattcagccctctctcgccgccacaacctcagggcgtgcgtgaaacgatctac
tgccagcgcccccacggcagcgcgctggcgctgaccctggcgcgtctggccgacgacgca
ccgcttttggtcatcacccccgacacggcggcggcgcagcgcctggagagcgcgctgcgc
ttctacgcgcaggtaccggtgatgcccttcccggattgggagaccctgccctacgacagc
ttctcgccgcaccaggacatcgtctccgcccgcctgcgcaccctgcgcgagcttcaggag
ggcacccgcggcatcgtgctggtaccgatcaacaccctgatgcagcgcctgccgccgcgg
gactacgtggccggccgcgtgctgacgctgaccaccggtgagcggctcgaccgcgaaggc
tttcgcgagcgtctatcgcgcgccggctaccgcgcggtggagacggtctacgagccgggc
gagtacgccatgcgcggcgcgctgatcgatctcttcccgatgggcaccgagacgccgctg
cgtatcgacctgttcgacgacgagatcgacagcctgcgccgtttcgaccccgatacccag
cgctcccaggacaagatcgagcgggtcgagctgctgccggcccacgagtactcgctgtcg
cgctccgcgatcgcctgctttcgcgagggcttcgagacgctgttcgacgtcgacccgcgc
cagtgcccgctctatgtcgatgcgctcaagggcatcccctcgcccggcctcgagcagtat
ctaccgctgtttttcgaggagaccgcgacgctgttcgagcatctcgacgccggcacccgg
gtcgcactgctgcccgagacgtacgccgccgccgagagtcactggcgcgccatcgagagc
cgctatgagaatctcggcgtcgatcccacgcggccgctgctgccgccggcgcgggccttc
gtaccggtggccgaggtgttcgccgcgatcaagcgccatccgcggctcgagttcgtcgcc
gccgaggacacccgtagcgccgccgccagcgccacccaggcaccgccggcggtatcgatc
aacgcccgcgcccagcggccgctggccaccctggagcagttcctggccagccatcagggg
ctgcgcgtgctgttcgtggccgaatcccgcgggcgccgcgaggcgttggaggaagcgctc
gcaccgctccacctgagcctgccccacgtcgacgactggcacgccttccgcgagggcagc
atgccctacgccatcggcgagggcgggctcgacgagggcctgtggctgggcgaccccgag
ctcgcggtgatcaccgagaccgaactctacggcgaggtggtgcgccaatcgcggcggcgc
gccaaggccaccgacgacaacgagctggcggtgcgccatctgtcggagctgcgccccggt
tcgccggtggttcaccagcaccacggcgtgggccgctaccaggggctcgagacgatccac
gccggcggcgtcgcggcggagttcctggcgctcgagtacgccggcggtgccaagctctac
gtgccggtggacaacctccagctcatttcgcgctacgccggtgccagcgacgaactggcg
ccgctgcacaagctcggctccgacagctgggacaaggccaagcgcaaggccgcggagaag
gtgcgcgataccgccgccgagctactcgacatctacgcccggcgcgaggcccgcgaaggc
tttgccagcgatatgccgggggacgaatacgcgcgcttcgccgccagcttcccgttcgag
gagaccccggatcagcaggccgcgatcgaagcggtgatccatgacatgaccgcccccagg
ccgatggatcgggtggtgtgcggcgatgtcggcttcggcaagaccgaggtcgccatgcgc
gccgccttcctggcggtcagctccggtcgccaggtggtggtcctggtgcccactaccctg
ctcgcccagcagcactatgacaatttccgcgaccgcttcgccgataccgcagtgcagatc
gaaatgctctcgcgtttcaccggcggcaagggcgagagcgacaccctggcgcgtatcgcc
gaggggcgcgccgatatcgtcatcggcacccacaagctgctgtcgaagtcgatcaagctg
cccaatctggggctgatgatcatcgacgaggagcaccgcttcggcgtggcgcagaaggag
cgtctcaagcagctgcgcgccgaggtcgatatcctcaccctcaccgccacgccgatcccg
cgcaccctcaacatggcgatgaacggcatccgcgatctgtcgatcatcgccaccccgccg
gcccgccggctctcggtcaagaccttcgtccagaaccgcaacgaggcggtggtcaaggag
gcgctgctgcgcgagatactgcgcgggggccaagtctacctgctgcacaacgaagtgcgc
accatcgaggccagcgccgacaagattcgcgaactggtgcccgaagcgcgggtcggcgtg
gcccacggccagctccccgagcgggcgctggagcgggtcatgtcggatttctaccacaag
cgcttcaatgtgctggtgtgctcgaccatcatcgagaccggcatcgacgttcccagcgcc
aataccatcatcatcgagcgcgccgacaagttcggcctggcccagctgcatcagttgcgc
gggcgggtcgggcgcagccaccatcaggcctacgcctatctgctgacccctccgcccaag
gcgatgaccaaggatgcgatcaagcgtctggaagcgatcactcagagcgacgatctgggg
gccggtttcaccctggccagtcacgacatggagattcgcggtgccggcgagctgctcggc
gacgagcagagcggccagatggagacggtcggctacagcctctacatgcagatgctcgac
cgcgccgtgaaggcgatccgcgccggcaagacgcccaatatcgaggccccgctcgacgaa
ggcaccgagatcagcctcaatctgccggccctgatccccgacgactacctgcccgatatc
cagcagcgcctgatcatgtacaagcgcatctccagcgccgccgacgaaggcgaactcaag
gagctgcaggtggagatgatcgaccgcttcggcctgctgccggggccgctgaagacgctg
ttccgccagacgcggctgcgtcagcgcgccgagcgcctgggtatcgcccggctcgaggcc
gggccagagcgcggccgggtgatattcggcgccgatccgcaggtcgacccgatgaccttg
gtcgagctgatccagcgccacccgaaggagtatcggctggacggcgccgacaccctgcgc
ttcagtgccgaaatggaacaggcggaggcacgcctggcccgggtcgacgccctgctggat
atcctgaatcgcaaggccaaggcggcctga
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