Salinibacterium sp. UTAS2018: ESZ53_13120
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Entry
ESZ53_13120 CDS
T05816
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sala
Salinibacterium sp. UTAS2018
Pathway
sala03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sala00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ESZ53_13120 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sala03400
]
ESZ53_13120 (mfd)
Enzymes [BR:
sala01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ESZ53_13120 (mfd)
DNA repair and recombination proteins [BR:
sala03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ESZ53_13120 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
UB2H
AAA_22
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QAV71295
UniProt:
A0A410YLG3
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All DBs
Position
2756816..2760502
Genome browser
AA seq
1228 aa
AA seq
DB search
MTLDGIISALSRAQTVESALRYSERSADFSLVEGLRAPLIGGLLTATDAPRSMLAVTATG
RESESLRRSLASYLPDAQIVEFPAWETLPHERLSPSAETVGKRMQALRDLAKWQANPVGQ
FVLVASVRAALQPIADNLITIEPVILTKGGRNYDLSALSARLVALAYSRVDMVTRRGEFA
VRGGILDVFAPNHEHPLRLEFFGDELEQLREFSVADQRSIDGDIEYAELVPSRELLLSDS
VRQRAREMQHEFPSLSTMLAKIAEGIPVDGMESLAPALVDKLVPLTHYLPPDAAIAVLSP
EKVSSRAVNLAETNQEFLSAAWNAATAGAEAPIDLDAGDFVTLNKLRASAGDRPWWTLST
FDSGEADAANLIDAAEEASEYVRIDATATPSFAGTLDGALDHVGTLLADGWTVAIVAEGT
GLVERTADLLGERELSGRAVEAFPETTEPGVAYLLRASVDHGFAMPEAKLAVLSEGEFFG
RSVGYASRPARKLATRRKNVVDPLQLKSGDHVVHQTHGIGKFIELVTRQVSTGGRNAVKT
QREFLVLEYAPNKRGYPGDKLYVPTDQLDLLSRYVGGEAPSLNKMGGTDWSAAKSKARKA
VRDIAVELVKLYSARMASKGHAFGPDTPWQRELEEAFAYAETPDQLTTIDEVKADMQSPV
PMDRLLSGDVGYGKTEVAVRAAFKAVQDGKQVAMIVPTTLLVRQHMETFADRFAGFPVHL
RALSRFQTEKESRETIAGLADGTVDVVIGTHRLLSKSVAFKDLGLVIIDEEQRFGVEHKD
ALKKLKTNVDILAMTATPIPRTLEMAVTGIREMSTLATPPEDRHPILSFVGPYSERQVGA
AIRRELLREGQVFYVHNRVSSINRVAAKIAELVPDARIAIAHGQMPEAALEQVMVDFWDR
KFDVLVSTTIVETGLDIPNANTLIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLYDEEK
PLSETAHERLDTIAANNELGAGMQIAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYLRMIG
EAVSTFRGDVAEGQTELRLELPVDASIPEDYVESERLRLEAYQKLSTASSPSASADSIDR
VLDELTDRYGEPPEEVKHLIAVSRLRRMSQRLKLSEVVVMGDKLRIAPADLLDSKQVRLQ
RMYPGSKYHSAASTAIIPLPTGADDGALIDWAKDLLVSVFGAQDTVEELKEVALAAEAAE
KLAVDKAAAKAKEAKESKDAGSASAPKK
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
gtgactctcgacggaattatctcagcactttcgcgcgcccaaaccgtagagagcgccctg
cggtactccgagcgcagcgctgacttctctctcgtcgaagggctacgggcgcccctcatt
ggtggccttcttaccgcgaccgacgcaccgcgctcgatgctcgcggttaccgcgaccggc
cgcgagtctgagtcactacgccgctctctcgccagctatcttcccgacgctcagatcgtg
gagttccccgcgtgggaaactttgccgcacgaacgcttgagccccagcgccgaaaccgtg
ggtaagcggatgcaggcgctgcgcgacttggcgaagtggcaggcgaacccggtgggccag
tttgtgctggtggcatccgttcgagcagcactgcaacctattgcagacaacctcatcacg
atcgaaccggtcatcctcaccaagggcggtcgcaactacgacctctccgctctgtcagcg
cgactcgtggcactggcatattcccgagtcgacatggttactcgtcgcggtgagttcgcc
gtgcgcggcggcattctcgacgtgtttgctcccaaccatgagcatccgcttcgtcttgaa
ttcttcggtgatgagcttgagcagttgcgcgagttctcggtggctgaccagcgttcaatc
gacggcgacattgagtacgccgagcttgtgccgagtcgtgaactgctcctcagtgattcg
gtgcggcagcgcgctcgcgaaatgcagcacgagtttccaagcctttcgacgatgctcgcg
aagattgccgagggcattccggtcgacggcatggagtcgctcgcgcccgcgctcgtcgac
aagctcgtgccgctgacgcactaccttcctccggatgccgcgattgcggttctttcgccc
gagaaagtttcttcgcgtgcagtgaacctcgccgagaccaaccaagaattcttgagcgcg
gcgtggaacgccgcgaccgctggggccgaagcgcccattgatttggacgccggtgacttt
gtcactctgaacaagctgcgcgcctccgccggggatcgtccctggtggaccctcagcaca
tttgattcgggcgaagcggatgccgcgaacctgatcgatgcggccgaagaagcatccgaa
tacgtgcgtatcgatgccaccgccacgccctcgttcgcgggaaccctcgatggtgctctc
gaccatgtgggtacgctgctcgctgacggctggacggtcgcgatcgttgccgaaggtacc
gggctcgtggagcgcacggccgacctgctgggggagcgcgagctctcgggccgcgcggtt
gaggcattccccgagaccacggaacccggcgtcgcgtacttgcttcgcgcatccgtcgac
catggttttgccatgcccgaagccaagctggcggtgttgagcgaaggtgagttcttcggc
cgctcggtcggctacgcctcgcggccagcgcgcaagctcgccacccgccgcaagaatgtc
gtcgacccgctgcagctcaagagcggcgaccacgtcgtgcaccagacccacggcatcggc
aagttcatcgaactcgtcacccgccaggtcagcacgggcggccgtaatgcggtcaagacg
cagcgcgaatttctcgtgcttgagtacgcgcccaacaagcgcgggtaccccggtgacaag
ctctacgtgcccaccgatcagctcgacctgctgtcgcgctatgtcggcggtgaggcaccc
tcgctcaacaagatgggcggcaccgactggtcggcggccaagagcaaagcgcgcaaggcc
gttcgcgacatcgcagttgagctcgttaagctctacagtgcacgcatggccagcaagggc
cacgcgttcgggccggataccccgtggcagcgcgagcttgaagaagccttcgcgtatgcc
gaaactcccgaccagttgacgacgatcgacgaagttaaagccgacatgcaaagcccggtt
ccgatggaccgccttctcagcggagacgtcggatacggcaagaccgaggtcgccgttcgt
gccgccttcaaggctgttcaagacggcaagcaggtcgcgatgatcgtgccgacgaccctg
ttggtgcgccagcacatggaaaccttcgccgatcgcttcgccggcttccccgtgcacttg
cgggcgctcagccgcttccagaccgagaaagagtcacgcgaaaccattgccggcctcgcc
gacggcaccgtggatgtcgtcatcggcacacaccgcttgctctccaagagcgtcgcgttc
aaagacctcgggctcgtcatcatcgatgaggagcagcgtttcggcgttgagcacaaagat
gcgctcaagaagctcaagaccaacgtcgacatcctggcgatgaccgcgaccccgattccc
cgcacgctcgagatggccgtcacgggcatccgcgaaatgtcgactcttgcgacgccgccc
gaagaccgccatccgattcttagcttcgttggcccgtattccgagcgtcaggttggcgcg
gccatccgccgtgagctgctgcgcgaaggccaggtcttctacgtgcacaaccgcgtgagc
tcgatcaaccgggtggcggccaaaattgccgaactggtgccggatgctcgcatcgcgatc
gcccacggccaaatgcccgaagcggcgctcgagcaagtgatggtcgacttctgggaccgc
aagttcgacgtgctcgtctcgacgacgattgtggaaactgggctcgacatcccgaacgcc
aacacgctcattatcgaccgtgccgacaagtacggcctcagccagcttcaccagttgcgc
gggcgagtgggtcgtggccgcgaacgcgcctatgcgtatttcttgtatgacgaagagaag
ccgctgagcgagaccgcgcacgaacgcctcgacacgatcgccgcgaataacgagctcggc
gccggaatgcagatcgccatgaaggacctcgaaattcgtggtgccggaaacctgctcggt
ggcgaacagtctggccacattgccggggtgggtttcgacctgtacttgcggatgatcggc
gaggccgtctccactttccgtggcgatgtcgccgaaggtcagaccgaactgcgcctcgaa
ctgccggtggatgccagcattcccgaagactacgtcgagagcgagcgattgcgactcgag
gcctaccagaagctctccacggccagctcgccctcggcatccgccgacagcatcgatcgt
gtgctcgacgagctgaccgaccgctatggcgagccacccgaggaagtgaagcacctcatc
gcggtctcgcgtttgcgtcggatgtcgcaacgcttgaagctgagcgaagtggtcgtcatg
ggagacaagctgcgcatcgcgccggccgatcttctcgactccaagcaagtgcgattgcag
cgcatgtacccgggctcgaagtaccactcggccgcgtcgacggcgatcattccgctgccg
accggtgccgacgatggcgcgctcatcgactgggcgaaggatcttctggtgtcagtgttt
ggcgctcaagacaccgtcgaagagctcaaagaagtcgcactcgcggccgaagctgccgag
aagcttgccgtcgacaaggcggcagcgaaagcgaaagaggcaaaggaaagcaaggatgcc
ggctccgcatccgcaccgaagaagtag
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