Streptomyces albidoflavus: XNR_2021
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Entry
XNR_2021 CDS
T02545
Name
(GenBank) Transcriptional-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
salb
Streptomyces albidoflavus
Pathway
salb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XNR_2021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salb03400
]
XNR_2021
Enzymes [BR:
salb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XNR_2021
DNA repair and recombination proteins [BR:
salb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
XNR_2021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGI88398
LinkDB
All DBs
Position
complement(2377549..2381082)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVTEDPALTQALKAAGDGHLLTADLVGPPAARPFTVAALARETGRTVLAVTA
TGREAEDLAAALRTLLPPDGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPDAGDP
ETGPVSVVVASVRSVLQPQVKGLGDLEPVALKAGRTTDLEEVVRALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEDYPVRIEFWGDEVEEIRYFKVADQRSLEIAEHGLWAPPCRELL
LTDQVRERAAALAVDHPELGELLGKIAEGVAVEGMESLAPVLVDEMELLLDVLPEGAMAL
VCDPERVRTRAADLVATSLEFLQASWAASAEGGQAPIDVGAASLWGIADVRERARELGMM
WWSVSPFAADEETYDGDTWQLGMRAPETYRGDTARALADTKRWLGEGWRTVFVTEAHGPA
ARTVEVLGSEGVPARLDGDLGEISPSVVHVACGAIDHGFTDERLKLAVLTETDLSGQKAA
GKDGQRMPTRRRKTIDPLTLESGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAK
RGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYS
ARMAAPGHAFGQDTPWQRELEDAFPYMETPDQLSTIAEVKDDMEKTVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVNVRALSRFQSDAEAK
ATLEGLRDGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYDPKQIGAAIRRELLREGQVF
YIHNRVESIDKAAARLREIVPEARIATAHGKMSEQALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRAALDGG
VEEEPAPEVKIELPVDAHVPHDYAPGERLRLQAYRAIASATTEDDIRAVREELTDRYGKL
PEPVENLLLVAGLRMLARSCGIAEIVLQGNNVRFAPVELRESQQLRLNRLYPRTVIKANT
HQILVPRPTTGKIGGKPVVGRELLSWVGEFLTSILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggactgctcgacgcggtgaccgaggacccggcgctgacccaggcgctg
aaggcggccggggacgggcacctcctcaccgccgacctggtcggcccgcccgccgcccgg
cccttcaccgtcgccgccctcgcccgcgagacgggccgtaccgtgctcgccgtcaccgcc
accggccgcgaggccgaggacctggcggccgccctgcgcaccctgctcccgccggacggc
gtcgtggagtacccctcctgggagacgctgccgcacgagcggctctcgccccgttccgac
accgtcggccgccgcctcgccgtgctgcgccgcctcgcccacccggacgccggcgacccc
gagaccggcccggtctccgtcgtcgtcgcctccgtgcgctccgtcctccagccgcaggtc
aaggggctcggcgacctggagccggtggcgctgaaggccgggcggaccaccgacctggaa
gaggtcgtgcgggcgctggccgccgccgcgtactcccgggtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgacgtcttcccgccgaccgaggactacccg
gtccgcatcgagttctggggcgacgaggtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggagatcgccgagcacggcctgtgggccccgccctgccgcgaactcctc
ctcaccgaccaggtccgcgagcgggccgccgccctcgccgtggaccaccccgagctgggc
gaactcctcggcaagatcgccgagggcgtcgccgtcgaggggatggagtccctggccccc
gtcctcgtcgacgagatggaactcctcctcgacgtgctgcccgagggcgccatggccctg
gtctgcgaccccgagcgggtccgcacccgcgccgccgacctggtcgccaccagcctcgaa
ttcctccaggcgtcctgggccgcctccgccgagggcggccaggcccccatcgacgtcggc
gcggcctccctgtggggcatcgccgacgtccgcgaacgcgcccgcgagctgggcatgatg
tggtggtccgtctcgccgttcgccgccgacgaggagacgtacgacggcgacacctggcag
ctggggatgcgcgcccccgagacgtaccggggcgacaccgcccgcgccctggccgacacc
aagcggtggctcggcgaggggtggcggaccgtcttcgtcaccgaggcgcacggccccgcc
gcccgcactgtcgaggtgctgggctccgagggcgtcccggcccggctcgacggcgacctc
ggcgagatcagcccctccgtcgtccacgtcgcctgcggcgccatcgaccacggcttcacc
gacgaacgcctcaagctcgccgtcctcaccgagaccgacctctccggccagaaggcggcc
ggcaaggacggccagcggatgcccacccggcgccgcaagaccatcgacccgctcaccctc
gagtccggcgactacatcgtccacgagcagcacggcgtgggccgctacatcgagatggtc
cagcgcaccgtgcagggcgccacccgcgagtacctcctcgtcgagtacgcccccgccaag
cgcggccagcccggggaccgcctctacatccccaccgaccagctggagcaggtcaccaag
tacgtcggcggcgaggcgcccaccctgcaccggctcggcggcgccgactggaccaagacc
aaggcgcgcgccaagaaggccgtcaaggagatcgccgccgacctcatcaagctctactcg
gcccggatggccgcccccggccacgccttcggccaggacaccccctggcagcgcgaactg
gaggacgccttcccgtacatggagacgcccgaccagctctccaccatcgccgaggtcaag
gacgacatggagaagacggtcccgatggaccgcctgatctgcggcgacgtcggttacggc
aagaccgagatcgcggtccgcgccgccttcaaggccgtccaggacggcaagcaggtcgcc
gtcctcgtccccaccaccctcctggtccagcagcacttcggcaccttctccgagcggtac
gcgcagttcccggtgaacgtccgcgccctctcccgcttccagtccgacgccgaggccaag
gccaccctggaggggctgcgggacggctccgtcgacatcgtcatcggcacccaccgcctc
ttctcctccgagaccaagttcaaggacctcggcctggtcatcgtcgacgaggagcagcgg
ttcggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtcctcacc
atgtccgccacccccatcccgcgcaccctggagatggcggtcaccggcatccgcgagatg
tcgacgatcaccaccccgcccgaggagcgccacccagtcctcaccttcgtcggcccctac
gacccgaagcagatcggcgccgccatccgccgcgaactcctccgcgagggccaggtcttc
tacatccacaaccgggtcgagtccatcgacaaggccgccgcccggctgcgcgagatcgtc
cccgaggcgcggatcgccaccgcccacggcaagatgtccgaacaggccctggaacaggtc
gtcgtggacttctgggagaagaagttcgacgtcctcgtctccaccacgatcgtcgagtcc
ggcatcgacatctccaacgccaacaccctcatcgtcgagcgcggcgacaacttcggcctc
tcccagctccaccagctccgcggccgcgtcggccggggccgcgaacgcgggtacgcctac
ttcctctacccgcccgagaagcccctgaccgagaccgcccacgagcgcctcgccaccatc
gcccagcacaccgagatgggcgccggcatgtacgtcgccatgaaggacctggagatccgc
ggcgccggcaacctcctcggcggcgagcagtccggccacatcgccggcgtcggcttcgac
ctgtacgtccgcatggtcggcgaggccgtcgccgactaccgcgccgccctcgacggcggc
gtcgaggaggaaccggctcccgaggtcaagatcgaactccccgtcgacgcccacgtcccg
cacgactacgcccccggcgagcgcctccgcctccaggcgtaccgcgccatcgcctccgcc
accaccgaggacgacatccgcgccgtccgcgaggaactcaccgaccgctacggcaaactc
cccgagcccgtcgagaacctcctcctcgtcgccggcctccgcatgctcgcccgctcctgc
ggcatcgcggaaatcgtcctccagggcaacaacgtccgcttcgcccccgtcgaactccgg
gaatcccagcaactccgcctcaaccgcctctacccccgcacggtcatcaaggccaacacc
caccagatcctggtcccccgcccgacaaccggcaagatcggggggaagcccgtggtgggg
cgggagttgctgtcgtgggtgggggagttcctgacgtcgattctggggtcgtag
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