Salinibacterium hongtaonis: C2138_08360
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Entry
C2138_08360 CDS
T05414
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
salc
Salinibacterium hongtaonis
Pathway
salc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
salc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C2138_08360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salc03400
]
C2138_08360
Enzymes [BR:
salc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C2138_08360
DNA repair and recombination proteins [BR:
salc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C2138_08360
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AWB89551
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Position
1737466..1739904
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AA seq
812 aa
AA seq
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MATRTHDDEQTVSIDGRKLRITRLDKVLYPETGTTKADVLDYFVRIADTMIPHTADRPAT
RKRWVHGVGTTDQPGQVFFQKNLDASAPHWIASREIQHRDHTNTYPLVNDRATLAWFAQM
AALEIHVPQWRFGRTGAHRNPDRFVLDLDPGEGAGLQECAEVARIARSILVDMGLDPMPV
TSGSKGIHLYAALDESRDSDAISAVAHELARALEADHPDLIVSDMKKALRGGKVLVDWSQ
NNASKTTIAPYSLRGRSHPMVAAPRTWEELDDPQLRHLDYTEVLERVATMGDPLAGLTAG
HFDSLEPTAAHMATFAATPETENRLEKYRSMRNAAKTAEPMGDSPTATPSPDAPTFVIQE
HHARRLHYDFRLEHDGVLVSWALPKGVPTDPAKNHLAVQTEDHPLDYGAFEGTIPAGEYG
AGDVTIWDSGTYDLEKWREGKEVIVTIDGERHGRHRYALIHTGAEPQTWLIHLMEKNGSA
PAPKRAASRTAAPAPMLASVADSGQLGMLAHDKDDWAFEMKWDGIRCIATVEDGEVRLTS
RNGNDLTVTYPELSELATAVEGDAVLDGEIVALNRKGRPDFGTLQQRMGVTRAAEVEAAR
EKNPVQLMVFDVLRQGNESLLPMTYDVRRERLQSAVTENSTIRVPDAFSGDLDAAMATSI
ELGLEGVMAKRRTSSYTPGRRSRSWIKIKHHHTQEVVIGGWRPGKGARSGLVGSLLLGVP
TDEGLRYVGRVGTGFTEKQLEAAAAKMRRLERKSSPFIEVPGADARDAHWVTPSLVGEVE
FSEWTATQRLRHPTWRGWRPDKDPDDVTIEQP
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggcgacccgaacccacgacgatgagcagaccgtaagcatcgacggcagaaagctcagg
atcacccggctcgacaaggtgctctaccccgagaccggcaccacgaaggccgatgtgctc
gactactttgtgcgcatcgccgacacgatgattccgcacaccgccgaccgcccggccacg
cgaaagaggtgggttcacggcgttggcacgaccgaccagccggggcaggtgttttttcag
aagaacctcgacgcgtcggccccccactggattgcgtcgcgggagatccaacaccgcgac
cacaccaacacgtaccctctggtcaacgacagagccacgctggcctggtttgcacaaatg
gccgccctcgagatccatgtgccgcagtggaggttcggccgcacgggagcgcacagaaac
cctgaccgctttgtgctggacctcgaccccggcgaaggggcgggtctgcaggagtgcgcc
gaagtcgccaggattgcgcgcagcatcctggtcgatatggggctggacccgatgcccgtg
accagcggcagcaaaggcatccacctctatgccgcactggacgaatcccgcgactccgac
gcaatctcggcggttgcccacgaactcgcccgtgcgctggaggccgaccatcccgacctc
atcgtgagcgatatgaaaaaggcactccgtggaggaaaggtgctggtggactggagtcag
aacaacgcatcaaagaccacgatcgcaccgtactcgcttcgggggcgatcacacccgatg
gtcgccgcgccgcggacatgggaggagcttgatgacccccagctccgtcatcttgactac
acagaagtgcttgagcgtgtcgccacgatgggtgacccgctggccggcctgaccgcagga
cacttcgactcgctggagccgaccgcggcccatatggccacgttcgccgcgaccccagaa
acagagaaccgactggagaagtaccggagcatgcgcaatgcggcgaaaaccgcggagccc
atgggcgactcccccaccgcgaccccctcacccgatgcccccaccttcgtaattcaggag
caccacgccaggcggctccactatgactttcgcctcgaacacgacggagtgctggtgagt
tgggcgctgcccaaaggggtaccaacggatcccgccaagaaccatctcgcggtgcaaacc
gaggatcatccgctggactacggcgccttcgaaggaaccatccctgccggcgaatatgga
gcaggtgacgtgaccatctgggattccggcacctatgacctcgaaaagtggcgcgagggc
aaagaggtcatcgtcaccatcgacggcgagcgccacggccgtcatcggtacgctctcatc
cacaccggcgccgagccgcagacctggctcatccacctgatggagaagaacggttccgcc
ccggcacccaaacgagccgcatcccgcaccgcggcgccagcccccatgctggcaagcgtc
gccgattccgggcagctggggatgctcgctcatgacaaagacgactgggcgttcgagatg
aagtgggacggcatccgctgcatcgccacggtcgaggacggggaggttcgactcacgagt
cgcaacggcaacgacctcaccgtcacctacccggaactttcggagcttgcgaccgcggtc
gaaggcgacgccgtgctcgacggcgagatcgtagctctcaaccgaaagggccggcccgac
ttcggcacgcttcagcaacggatgggggtcacccgagcagccgaggtcgaggcggcccgg
gagaagaaccccgtgcagttaatggtgttcgatgtgctgcgtcaaggcaatgagtcactc
ttgccgatgacctacgacgtgagacgagagcgtctccagtccgcggtgacagagaactcg
acaattagagttcccgatgccttctcgggggatctggatgccgccatggcgacgagcatt
gagctcggtctcgaaggggtaatggcgaaacggcgcacaagctcatacacgccaggacgc
cggtcccgcagctggatcaagatcaagcatcatcacacccaggaggttgtcatcggcggc
tggcgcccgggcaagggtgcgagatcgggtcttgtcgggtctcttcttctcggagtccct
acggatgagggactgcgctacgtcggcagagtgggaaccggatttactgagaagcagctc
gaggccgccgctgccaaaatgcgaaggctcgaacgcaagagctcaccattcatcgaggtg
ccaggtgcggatgcccgagatgcgcactgggtcacaccctcactcgtcggcgaggtcgag
ttctccgagtggacggccacacaacgcctccggcacccgacgtggcgaggctggcggccc
gacaaggacccagacgatgtgacgatcgagcagccgtga
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