Streptomyces alboflavus: SMD44_03462
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Entry
SMD44_03462 CDS
T05221
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
salf
Streptomyces alboflavus
Pathway
salf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SMD44_03462 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salf03400
]
SMD44_03462 (mfd)
Enzymes [BR:
salf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SMD44_03462 (mfd)
DNA repair and recombination proteins [BR:
salf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SMD44_03462 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ARX84028
UniProt:
A0A1Z1WCD1
LinkDB
All DBs
Position
complement(3823367..3826930)
Genome browser
AA seq
1187 aa
AA seq
DB search
MSLHGLLDVVVEDAALTEAVKAAADGNRHHIDLVGPPAARPFAVAALAREARRTVLAVTA
TGREAEDLAAALRTVLPPEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRLGDA
ADPETGPVSVVVAPVRSVLQPQVKGLGDLEPVSLRTGESADLNETVQALAAAAYARVELV
EKRGEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEIAEHGLWAPPCR
ELLLTEEVRGRAAALAERHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGS
MALVCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWGIADVRDRAREL
GMMWWSVSPFAADETPEPSDITDLADADTLKLGMHAPETYRGDTAKALADTKGWLADGWR
TVYVTEGHGPAARTAEVLGGEGIAARLDADLTELTPAVVHVACGSIDYGFVDPALKLAVL
TETDLTGQKAAGKDGQRMPARRRKTIDPLTLEPGDYIVHEQHGVGRYIEMVQRTVQGATR
EYLVVEYAPAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVK
EIAADLIKLYSARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPM
DRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFTERYGQFPVNVRA
LSRFQSDTESKATLEGLKDGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQL
KKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAI
RRELLREGQVFYIHNRVESIDRAAARLRDIVPEARIATAHGQMSEQALEQVVVDFWEKKF
DVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPL
TETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEA
VADYRASLEGGVEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANTEADIKAV
REELTDRYGKLPEPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELAESQELRLKR
LYPGTVIKPATHQVLVPRPKTAKVGGKPLVGRELLGWVGEFLTSVLG
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggactgctggacgtcgtcgtcgaggacgcggccctcaccgaagcggtg
aaggccgcggccgacggcaaccggcaccacatcgacctcgtcggccccccggccgcccgc
cccttcgccgtggcggccctcgcgcgggaggcccgccgcacggtcctcgcggtgaccgcc
accggccgtgaggccgaggacctggccgcggcgctgcggacggtgctgccgccggagggg
gtcgtggagtacccgtcgtgggagacgctgccgcacgagcgtctttccccgcgctcggac
accgtcggccgccgcctcgcggtcctgcgccgcctcgcgcacccgcgccttggcgatgcg
gcggacccggagacgggcccggtgtcggtggtcgtggcaccggtgcgctccgtgctgcaa
ccgcaggtcaagggcctcggcgacctggagccggtgtcgctgcgcacgggcgagtcggcg
gatctgaacgagaccgtccaggccctggccgcggcggcgtacgcgcgcgtggagctggtg
gagaagcgcggcgagttcgccgtacgaggaggcattctcgacgtcttcccgcccaccgag
gagcaccccctgcgggtggagttctggggcgacgacgtcgaggagatccgctacttcaag
gtcgccgaccagcgctccctggagatcgcggagcacggcctgtgggcgccgccgtgccgt
gagctgctgctgaccgaggaggtcaggggcagggccgcggcgctggcggagcggcacccg
gagctcggcgagctgctcggcaagatcgccgagggcatcgcggtcgagggcatggagtcc
ctggccccggtcctggtggacgacatggagctgctgctcgacgtgctgccgaagggttcg
atggcgctggtgtgcgacccggagcgggtgcggaccagggccgcggacctggtggcgacg
agccaggagttcctgcaggccagctgggccgcgacggccggcgggggcgaggccccgatc
gatgtgggcgcggcctcgctgtggggcatcgcggacgtccgggaccgggcccgtgagctg
ggcatgatgtggtggtcggtgagcccgttcgccgccgacgaaacgcctgagccctccgac
atcacagacctggcggacgccgacaccctcaagctcggcatgcacgccccggagacctac
cgcggggacaccgcgaaggccctcgccgacaccaagggctggctcgccgacggctggcgc
acggtgtacgtcacggagggccacggcccggccgcccgcaccgccgaggtcctgggcggc
gagggcatcgcggcccgcctcgacgccgacctgaccgagctgaccccggccgtggtgcac
gtggcgtgcggctccatcgactacggcttcgtcgacccggcgctgaagctcgccgtcctc
acggagaccgacctcaccggccagaaggcggcgggcaaggacgggcagcgcatgcccgcc
cggcgccgcaagaccatcgatccgctgaccctggagccgggcgactacatcgtccacgag
cagcacggcgtcggccgctacatcgagatggtgcagcgcacggtccagggcgcgacccgt
gagtacctggtcgtggagtacgcccccgccaagcgtggccagcccggcgaccggctctac
atccccaccgaccagctggagcagatcaccaagtacgtgggcggcgaggccccgaccctg
caccggctcggcggcgccgactggacgaagaccaaggcgcgcgcgaagaaggcggtcaag
gagatcgccgccgacctgatcaagctgtacagcgcgcggatggcggcccccggccacacc
ttcggcccggacacgccctggcagcgcgagctggaggacgccttcccgtacgcggagacg
cccgatcagctcaccaccatcgccgaggtcaaggaggacatggagaagtcggtcccgatg
gaccgtctgatctgcggcgacgtgggctacggcaagacggagatcgcggtccgcgcggcc
ttcaaggcggtgcaggacggcaagcaggtcgcggtcctcgtgcccacgacgctcctggtg
cagcagcacttcggcacgttcaccgagcggtacggccagttccccgtcaacgtacgggcg
ctcagccgcttccagagcgacaccgagtccaaggcgaccctggagggcctgaaggacggc
tccgtcgacatcgtcatcggcacccaccgcctgttctcctccgagaccaagttcaaggac
ctgggcctggtcatcgtcgacgaggagcagcggttcggcgtggagcacaaggagcagctg
aagaagctgcgcgcgaacgtcgacgtcctgacgatgtcggcgacgcccattccccgtacg
ctcgaaatggccgtgaccggcatccgcgagatgtcgacgatcacgaccccgccggaggag
cggcacccggtcctgaccttcgtcgggccgtacgaggagaagcagatcggcgcggccatc
cggcgtgaactgctgcgcgagggccaggtcttctacatccacaaccgcgtcgagtccatc
gaccgggcggcggcgaggctccgcgacatcgtgcccgaggcgcgcatcgcgaccgcgcac
ggccagatgtcggaacaggccctggagcaggtcgtcgtggacttctgggagaagaagttc
gacgtgctggtgtcgacgacgatcgtcgagtccggcatcgacatctccaacgccaacacc
ctcatcgtggagcgcggcgacaacttcggcctgagccagctgcaccagctgcgcggccgg
gtcggccgtggccgcgagcgcggctacgcgtacttcctgtacccgccggagaagccgctg
accgagaccgcgcacgagcgcctcgccaccatcgcccagcacacggagatgggcgcgggc
atgtacgtggcgatgaaggacctggagatccgcggcgccggaaacctcctcggcggcgag
cagtcgggccacatcgcgggcgtcggcttcgacctgtacgtccgtatggtcggcgaggcc
gtcgccgactaccgcgcgtccctggagggcggggtggaggaggagccgccgctggaggtc
aagatcgagctgccggtcgacgcgcacgtcccgcacgactacgcccccggcgagcgcctg
cgcctccaggcgtaccgctcgatcgcctccgccaacacggaggccgacatcaaggcggta
cgggaggaactcaccgaccgctacggcaagttgccggagccggtggagaacctgctcctg
gtcgcgggcctgcgcatgctggcgcgggcgtgcggggtcggcgagatcgtcctgcagggc
accaacatccgcttcgcgcccgtggagctcgcggagtcccaggagctgcgcctcaagcgc
ctctaccccggcacggtcatcaagcccgccacccaccaggtcctggtgccgcgcccgaag
acggcgaaggtcggcggcaagccgctggtcgggcgtgaactgctcggctgggtgggggag
ttcctgacgtccgtgctggggtag
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